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Information for unigene UN51894
| FASTA Sequence |
| Unigene ID: UN51894 | Length: 759 |
SSR | | GGAGAACCCTTAAACCTTATCCCATCCCGAGAGAGAGAGAGCCATGTCTGCCTCCGCTTCTTCCGTTTCCCTCTCTTCCTTCAATC
CCAAATCCCTTCTTCCTCTCTGCCTTTCCCGCTCCGCCCTCAAATCCTCCTCCTCACCCGCCCAATTCCCATCTCTCTTCGTCACA
CACGTCGCCGTATCCTCTGATTTCGAGGTTGAGGAAGACGACATGTTCGCTGACGACGATTCTCCGCCGCCGCAGGAGCGCAGCTC
CTTCTCTGCTGACCTCAAACTCTTCGTCGGTAACCTTTCCTTCGATGTCGAAAGCGCCCAGCTCGCTCAACTGTTCGATAGCGCCG
GTAACGTTGAGATGGTTGAGGTTATCTATGACAAATTGACTGGCCGAAGCAGGGGTTTTGGGTTTGTCACTATGTCCTCTGCACCT
GAAGCTGAGGCTGCAGCTCAACAGTTCAATGGCTATGAATTTGAAGGTAGACCCTTGAGGGTTAACGCTGGCCCTCCTCCACCTAA
GGGGGAGGAATCATTCTCCAGGGGACCAAGGAGTGGTGGTTATGGTTCTGAACGTTCAGGTTACAGTTCTGAACGTTCCGGTTACG
GGTCTCAACGTTCAGGACGTTCTGGTTACGGTTCTGAGCGTTCTAGCTACGGTTCTGGGTCTGGTTCGGGCTCGGGCTCATCAGAC
CGTGTTTATGTGGGTAACCTTTCTTGGGGTGTGGATGACATGGCTCTTGAGAGCTTGTTTAGTGAGCAAGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| BAA06518 RNA-binding protein cp29 [Arabidopsis thaliana] | 813 | 8e-085 |
| BAA06519 RNA-binding protein cp29 [Arabidopsis thaliana] | 813 | 8e-085 |
| NP_190914 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 730 | 3e-075 |
| XP_002877921 hypothetical protein ARALYDRAFT_348440 [Arabidopsis lyrata subsp. lyrata] | 721 | 4e-074 |
| NP_001190079 chloroplast RNA-binding protein 29 [Arabidopsis thaliana] | 710 | 7e-073 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q43349 29 kDa ribonucleoprotein, chloroplastic | 730 | 2e-076 |
| Q9ZUU4 Ribonucleoprotein At2g37220, chloroplastic | 517 | 8e-052 |
| P49314 31 kDa ribonucleoprotein, chloroplastic | 435 | 3e-042 |
| Q08937 29 kDa ribonucleoprotein B, chloroplastic | 419 | 2e-040 |
| Q08935 29 kDa ribonucleoprotein A, chloroplastic | 406 | 6e-039 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L941 Putative RNA-binding protein | 521 | 4e-051 |
| Q7GA50 Putative RNA-binding protein | 517 | 1e-050 |
| B9S0K6 Ribonucleoprotein, chloroplast, putative | 466 | 1e-044 |
| B9MTC6 Predicted protein | 441 | 8e-042 |
| C6TEA3 Putative uncharacterized protein | 431 | 1e-040 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G53460.1 CP29; RNA binding / poly(U) binding | 730 | 1e-077 |
| AT3G53460.2 CP29; RNA binding / poly(U) binding | 730 | 1e-077 |
| AT2G37220.1 29 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putative | 517 | 7e-053 |
| AT4G24770.1 RBP31 (31-KDA RNA BINDING PROTEIN); RNA binding / poly(U) binding | 249 | 9e-022 |
| AT5G50250.1 31 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putative | 238 | 2e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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