RadishBase

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Information for unigene UN51921

FASTA Sequence

Unigene ID: UN51921	Length: 662	SSR
GGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGAGGCGTGTGAGATTTTAGGAGAGAGAGAGAGGATGGAGAATCTCTGGCGAAT CGCAACAGGCCAGGATCCGAACCGGCAAGACTACGAAGGAATCGAGTTCTGGTCAAACCCAGAGCGATCGGGCTGGCTCACGAAGC AAGGCGATTACATCAAGACCTGGCGACGTCGCTGGTTCGTGCTCAAGCGAGGGAAGCTCCTCTGGTTCAAGGACCAATCGGCGGCG CTGACACGCGGATCCGTCCCGCGCGGGGTGATCTCGGTGGGGGATTGTCTGACGGTGAAAGGAGCAGAGGACGTGGTGAACAAGGC TTTTGCCTTCGAGATATCGAGCGGGAACGTCGCCATGTTCTTCGTGGCTGATAACGAGAAGGAGAAGGAGGAGTGGATCAACTCTA TTGGGAGGTCGATTGTGCAGCACTCCAGATCTGTTACTGATTCTGAAGTCCTTGATTATGATCAAAGGCCCTGACTTATCCTTCTA TTGCTTTTATGTTTTTGGTTAATGTTTTTTACTTCTATTGTACGACGTCGTTGTCATGTATGTGTATTCCTCTCTCTATCTCTCTG TGCTTGTGGTTTTGTTATGTATCTGCTTCTCGATTCAGTGAACAAGTTTTGTCTTTTCAG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002879229 hypothetical protein ARALYDRAFT_481886 [Arabidopsis lyrata subsp. lyrata]	716	1e-073
BAA84651 AtPH1 [Arabidopsis thaliana]	705	2e-072
NP_565687 Pleckstrin homology domain-containing protein 1 [Arabidopsis thaliana]	705	2e-072
XP_002314112 predicted protein [Populus trichocarpa]	589	6e-059
XP_002299816 predicted protein [Populus trichocarpa]	578	1e-057

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ST43 Pleckstrin homology domain-containing protein 1	705	1e-073
Q86IV4 PH domain-containing protein DDB_G0274775	166	3e-011
Q80TI1 Pleckstrin homology domain-containing family H member 1	161	1e-010
Q9ULM0 Pleckstrin homology domain-containing family H member 1	149	3e-009
Q8N264 Rho GTPase-activating protein 24	148	4e-009

TrEMBL top hits (Blast detail)	Score	e value
B9HP54 Predicted protein	599	3e-060
A9PBD5 Predicted protein	588	5e-059
A5BV78 Putative uncharacterized protein	586	9e-059
B9SI06 Plekhh protein, putative	576	1e-057
C6T5R3 Putative uncharacterized protein	569	8e-057

Arabidopsis top hits (Blast detail)	Score	e value
AT2G29700.1 ATPH1 (ARABIDOPSIS THALIANA PLECKSTRIN HOMOLOGUE 1); phosphoinositide binding	705	9e-075
AT5G05710.1 pleckstrin homology (PH) domain-containing protein	542	7e-056

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			100%

Unigene Members