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Information for unigene UN51939
| FASTA Sequence |
| Unigene ID: UN51939 | Length: 841 |
SSR | | GGAATTTTGTCTTGAGTTCTGTTTCTTCTTGTAGCTTCGAAGCTAGAGAGAGAGATCAAGTGAGTGAGAGTGGTGTGGAAGCAAAA
TACACGATCTGCCCCTTTCTTTTTATTCTTCGATCGGAGCTTTCAGACATTCCGACAAAAGCAAATAAAAGGCTTCTTCTTTTGTT
TCCGGGAGAGATTTGTCTCCCTCTGTTTAGAAAATGGAGCGGTACGGTCGCGCCGGCGAAGAAGGGTCGCGATCGGATCCGTCGAT
TCAATGGACCTCTCATGGAGTTGAAGCTTCGATGGCGCGTTTAGTGTTGAGCGGTGGCGTTGGAGCTGGAGGAGGAGGAGAATCGT
ATCCGGTGCGATCCGATGAGCCTGATTGTATTTATTACTTGCGAACCGGTGTCTGCGGGTACGGGTCAAGATGTCGGTTTAATCAC
CCACGAGATCGTGGAGCTGGTATTGGAGGTTCGAGAGGAGGAGGAGATGGAGCTTTACCGGAGAGAATGGGACATCCGGTTTGCCA
GCATTTTATGAGAACGGGGACATGTCAGTTCGGTGCTTCTTGCAAGTACCATCATCCTAGACAAGGAGGTGGTTCTATTGCGCCTG
TCTCTTTAAGTTATTTGGGATATCCATTACGCCCGGGAGAGAAAGAGTGCTCTCATTACATGAGAACCGGTCAGTGTAAATTTGGT
TTGACCTGTAGATTCAACCATCCAGTTCCATTGGGGGTACATGGACAACAATCTCAGCAGCAGCAGCAGCCACAGCCGCAGATGCA
TTCTGTATATCCAACACTTCAATCTCAATCCATGCCTTCATCTCTCAACAGTATGGTTTAGTTTTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ADK63414 CCCH type zinc finger protein [Brassica rapa] | 862 | 2e-090 |
| CAN78551 hypothetical protein VITISV_003243 [Vitis vinifera] | 674 | 1e-068 |
| XP_002276435 PREDICTED: hypothetical protein [Vitis vinifera] | 672 | 2e-068 |
| XP_002330352 predicted protein [Populus trichocarpa] | 634 | 6e-064 |
| XP_002516892 nucleic acid binding protein, putative [Ricinus communis] | 632 | 9e-064 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SQU4 Zinc finger CCCH domain-containing protein 34 | 934 | 4e-100 |
| Q6NPN3 Zinc finger CCCH domain-containing protein 58 | 761 | 5e-080 |
| Q5NAW2 Zinc finger CCCH domain-containing protein 6 | 504 | 3e-050 |
| Q84W91 Zinc finger CCCH domain-containing protein 32 | 490 | 1e-048 |
| Q5NAV3 Zinc finger CCCH domain-containing protein 5 | 464 | 1e-045 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5B1K6 Putative uncharacterized protein | 674 | 9e-069 |
| B9N500 Predicted protein | 634 | 4e-064 |
| B9RT23 Nucleic acid binding protein, putative | 632 | 7e-064 |
| B9HSD6 Predicted protein | 627 | 2e-063 |
| B9S3U9 Nucleic acid binding protein, putative | 540 | 3e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G06410.1 nucleic acid binding / zinc ion binding | 934 | 4e-101 |
| AT5G18550.1 nucleic acid binding / zinc ion binding | 761 | 4e-081 |
| AT2G47850.1 zinc finger (CCCH-type) family protein | 490 | 1e-049 |
| AT2G47850.3 zinc finger (CCCH-type) family protein | 490 | 1e-049 |
| AT3G02830.1 ZFN1 (ZINC FINGER PROTEIN 1); DNA binding / nuclease/ nucleic acid binding | 439 | 9e-044 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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