RadishBase

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Information for unigene UN51983

FASTA Sequence

Unigene ID: UN51983	Length: 747	SSR
GATTCATAGTTAACTTGCTGTTTTCTTATCCTCCCCCCCCCCCCCCTCTCTCTCTCTCTCTCAGCTATATACAAAAACTTACTTTT TAATCTCTCTTACAATAAGTCAAGAACTCAGAAGAAGACATGACAGGTGAAGTTCTTAAGACTGTTTCTAGCGGATCAGCATTTGC TCCGAGCTCATCTACTCTGGATCATGATGAATCTCTCATCAATCCTCCTCTTGTTAAGAAGAAGAGAAATCTCCCTGGAAATCCTG ATCCGGAAGCTGAAGTAATAGCTTTATCTCCCAAGACCTTGATGGCTACGAATCGGTTCCTCTGCGAGGTCTGTGGTAAAGGTTTC CAAAGAGACCAGAACTTACAGCTTCGTCGTCGAGGACATAATCTTCCATGGAAACTAAAGCAGAGGACAAGTAAAGAAGTGAGGAA ACGTGTCTATGTTTGCCCGGAGAAGACTTGTGTCCACCATGACCCTGCTAGAGCTCTGGGCGATCTCACCGGTATCAAAAAACATT TCTGTAGGAAACACGGCGAAAAGAAGTGGACGTGCGAGAAATGTGCCATGAGATACGCTGTTCATTCTGATTATAAAGCTCATTCT AAGACTTGTGGTACTAGAGAGTACCGTTGCGACTGTGGCACCATTTTCTCCAGGCGAGACAGCTTCATCACCCATAGAGCATTTTG CGATGCCTTAGCTGAAGAAACCGCCAAAATAAACGCAGCATCTCATCTTAACGGTTTAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002865381 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]	1047	6e-112
NP_199229 zinc finger protein NUTCRACKER [Arabidopsis thaliana]	1035	1e-110
XP_002892182 hypothetical protein ARALYDRAFT_470357 [Arabidopsis lyrata subsp. lyrata]	954	3e-101
NP_171880 zinc finger protein MAGPIE [Arabidopsis thaliana]	947	2e-100
NP_001030951 zinc finger protein MAGPIE [Arabidopsis thaliana]	921	2e-097

Swiss-Prot top hits (Blast detail)	Score	e value
Q9FFH3 Zinc finger protein NUTCRACKER	1035	7e-112
Q9ZWA6 Zinc finger protein MAGPIE	947	1e-101
Q700D2 Zinc finger protein JACKDAW	759	7e-080
Q8VWG3 Protein TRANSPARENT TESTA 1	139	5e-008

TrEMBL top hits (Blast detail)	Score	e value
C0SUS5 Putative uncharacterized protein At1g03840 (Fragment)	947	2e-100
B8ABF4 Putative uncharacterized protein	853	1e-089
B9EUM1 Putative uncharacterized protein	853	1e-089
Q5NA81 Os01g0242200 protein	853	1e-089
A5BN05 Putative uncharacterized protein	840	4e-088

Arabidopsis top hits (Blast detail)	Score	e value
AT5G44160.1 NUC (nutcracker); nucleic acid binding / transcription factor/ zinc ion binding	1035	6e-113
AT1G03840.1 MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding	947	1e-102
AT1G03840.2 MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding	921	1e-099
AT5G66730.1 zinc finger (C2H2 type) family protein	800	1e-085
AT3G13810.1 AtIDD11 (Arabidopsis thaliana Indeterminate(ID)-Domain 11); nucleic acid binding / transcription factor/ zinc ion binding	796	3e-085

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	1			100%

Unigene Members