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Information for unigene UN52001

FASTA Sequence
Unigene ID: UN52001Length: 625 SSR 
GGGTGTGTCGAGAGAGAGAGAGAGAGATATCTAGGGTTTGTACGATTCTCCAGCGACGATGCTAAGCGACGATTTCACGGCGAAAC
GAGCTGCGGCCGAGGAGGAATCGGACTCTTCTGTCTCGATAAAGCAGAAGTTGGAAGATGAAGACGACGACGACGACACAAGCATG
GAAGAGGATAGCGATACCGACAGCGGACGCGCATGGTCTGTCGACACTGAAGAAGAATAAGACCGTGGAATTGGTAAGCATCGTTA
GAGGCAATATGAAAGTAGGAGATGGTTGGAAGCTGTACATCACCTTTATGGCTCGAGAGTATACCAATGGTCCTCTCGTGGAGTAT
CAAGCCAAGGCTATGGATTTTGGAGCAAAACCTCCCTTTCCCATCCTCTGCCGACCAGCTTCTCCCAAATCCTAATCTGTGACCTG
CATAGATTTGGTATGCTGGTGGTAGTTCTACGAGGACCAAGATCATAATGTATTAAAATGAGTCTTTTATGATTAAGCCGAGTCCC
AGATGGATTTAGGTTGTATTAATGTTATCTATGTCTTTTGCGTTGAGACTTATGGATTTAATATTGTGGATCTTAATGATGGTTGT
TATATTATGTTTGATGTTTATTT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197211 cystatin-related protein [Arabidopsis thaliana]2052e-014
XP_002873813 hypothetical protein ARALYDRAFT_488575 [Arabidopsis lyrata subsp. lyrata]2052e-014
XP_002873810 predicted protein [Arabidopsis lyrata subsp. lyrata]2006e-014
NP_197217 cystatin-related protein [Arabidopsis thaliana]1998e-014
NP_197214 cystatin-related protein [Arabidopsis thaliana]1909e-013

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9LFJ4 Putative uncharacterized protein F2K13_2402051e-014
Q9LFJ1 Putative uncharacterized protein F2K13_2701906e-013
Q9LFJ2 Putative uncharacterized protein F2K13_2601881e-012
Q58FU2 Putative uncharacterized protein1664e-010
Q9LFJ3 Putative uncharacterized protein F2K13_2501664e-010

Arabidopsis top hits (Blast detail)Scoree value
AT5G17090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17120.1); Has 28 Blast hits to 26 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2058e-017
AT5G17150.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf whorl, embryo, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, D bilateral stage, E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17120.1); Has 23 Blast hits to 23 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1994e-016
AT5G17120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17150.1); Has 47 Blast hits to 45 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 11; Fungi - 3; Plants - 32; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).1904e-015
AT5G17110.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17100.1); Has 34 Blast hits to 32 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1887e-015
AT5G17100.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte; EXPRESSED DURING: L mature pollen stage; CONTAINS InterPro DOMAIN/s: Cystatin-related, plant (InterPro:IPR006525); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17110.1); Has 36 Blast hits to 34 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1663e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  100%

Unigene Members