Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN52007

FASTA Sequence
Unigene ID: UN52007Length: 673 SSR 
GATAGAGTGACAAAGATATATATATATCATTTGGTATCCCTCTCAAAGTCGCTTTCCTAAAGAATTCGTCATTATCCAAGCATTGC
CAACAAGCAATACCAAAACGAAGCAAACGAATGTTGAAAATACAAAAAGAAGTAGGAACTATGAAACCTCAACATCAAAACCTTTT
TTATTTGTCACCTAATTTGACTAGATAGTTGTTATAAAGCAGATTGTTCTTTAATGATGATGATGACGAAACATGTATGTTGTATC
TATGATGCTCCATCTACAAGAATGAGAAGGAGAGAATTTGGAAACTCCTCTCGCTCTTCAAGAATCATTACCAGTAATTTTATTGT
TAACCTTGGTTGAGTCTTGGCCATTGATTTAAGATGATGATGATGATTCATCTGGCTTCTCGCTGCTACCCTTTGTAGTAGAGGAG
GTACCGGGTTGCTGTCTTCCCTTAAAAATACCGGTCAGTCCCCGTGCCTTAGCAAGTTCTTCAACCTCAGCTAGTTTGCTTTGGAG
ATCAGCCATTTGCTTTTCCAGTAGTTCATCTTTTTTTCTCAACTCCTGTAAATAAAAATGCCAAGAGCTTTTTAAATAAAAAGCAG
TGGTATCAACGCAGAGTGATCATGTTATCATATCTAATCATCTTCTGTTTGTATTTCATTACAATGAGTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564311 Optic atrophy 3 protein (OPA3) [Arabidopsis thaliana]1667e-010
XP_002890780 hypothetical protein ARALYDRAFT_890393 [Arabidopsis lyrata subsp. lyrata]1631e-009

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q9SGP9 At1g28510/F3M18_51665e-010

Arabidopsis top hits (Blast detail)Scoree value
AT1G28510.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Optic atrophy 3-like (InterPro:IPR010754); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58150.1); Has 279 Blast hits to 279 proteins in 116 species: Archae - 0; Bacteria - 0; Metazoa - 133; Fungi - 74; Plants - 40; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).1663e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  100%

Unigene Members