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Information for unigene UN52030

FASTA Sequence
Unigene ID: UN52030Length: 652 SSR 
CGACGTTTTAGTGATCATCTAGAGAACTGTATAATGATTTCGTTATCGCAAAAGCATTAGATCGAACAAAGTTTGTAGGCGAACTC
CATAGCTACGTTTCTCTATTGACTCATTCACAATAGATTCATTTGTTTATGTGACTTCAATCAAAAAAAAAAAATTTGAATAGCGG
AAGAAGCGAAGATGGTGGAATCGTTTCATATGTTTCAGACCTTCAACACAAAGAAGAAAACGAATAGGGAAAGCTGCTCTTGCTCC
TGAACCGGTTCCTACCGATTCCACATCCAATTCCGGTTATCGTTCGGTTATGACGGCTCTTCCTTTCATAGCCCCACCTTCCTCTC
CAGCTTCCTTCTTCCAATCAGAACCTCCTTCCGCTACACAGTCACCTGTAGGGATCCTCTCCTTTAGTCCTCTACCTTCTAACAGC
CACAACAACAACAACAACAGCGAAGAACGTCCTTCGATCTTCGCCATCGGACCTTACGCTCACGAACCTCAGCTGGTTTCTCCTCC
GGTTTTCTCTACTTACACCACCGAACCGTCTTCGGCTCCGGTCACGCCGCCTCTCGACGAGTCTTTCTACTTAACCACCACCACAC
CTTCTTCGCCTGAAGTCCCTTTCGCTCAGCTCTTTAACTCCAGCAGTAAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
CAZ40337 hypothetical protein [Raphanus sativus]7446e-077
CAZ44327 hypothetical protein [Raphanus sativus]7232e-074
ABJ98061 unknown [Eutrema halophilum]6415e-065
XP_002886388 hypothetical protein ARALYDRAFT_474978 [Arabidopsis lyrata subsp. lyrata]6182e-062
NP_564816 uncharacterized protein [Arabidopsis thaliana]6003e-060

Swiss-Prot top hits (Blast detail)Scoree value
Q9SRE5 Uncharacterized protein At1g766602586e-022
Q54MV3 Rho GTPase-activating protein gacJ1242e-006

TrEMBL top hits (Blast detail)Scoree value
C4WRH4 Putative uncharacterized protein7444e-077
D0R6K0 Putative uncharacterized protein l7rfog37231e-074
A0FIZ9 Putative uncharacterized protein6414e-065
Q93W23 At1g63720/F24D7_96002e-060
Q9CAD7 Putative uncharacterized protein F24D7.95187e-051

Arabidopsis top hits (Blast detail)Scoree value
AT1G63720.1 EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 406 Blast hits to 313 proteins in 78 species: Archae - 0; Bacteria - 2; Metazoa - 123; Fungi - 81; Plants - 111; Viruses - 14; Other Eukaryotes - 75 (source: NCBI BLink).6001e-062
AT5G52430.1 hydroxyproline-rich glycoprotein family protein3706e-036
AT4G25620.1 hydroxyproline-rich glycoprotein family protein3392e-032
AT1G76660.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 280 Blast hits to 160 proteins in 42 species: Archae - 0; Bacteria - 4; Metazoa - 55; Fungi - 17; Plants - 64; Viruses - 4; Other Eukaryotes - 136 (source: NCBI BLink).2586e-023

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  100%

Unigene Members