Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN52143

FASTA Sequence
Unigene ID: UN52143Length: 824 SSR 
GCTATCGTCGTCAAGAGCCAGAGAGAGAGAGAGAGAGGAATCGGTTGTGTGTTGTCGAAGCTTCTTGGCTCTCTCTTCTCCGGCTA
TCTTATTGTCAACGCGTATCTCTCGTCTGCGATCTCTCGTTGATCAGAGGATGTTGGAGCTGGAAAATCAAGTCTTGTGCTTCGAT
TCGTCAAAGATCAGTTTGTTGAATTCCAGGAATCAACGATAGGTGCAGCCTTCTTCTCTCAAACACTGGCTGTCAATGATGCAACT
GTCAAGTTTGAGATTTGGGGTACTGCTGGTCAGGAACGTTACCATAGCTTGGCTCCTATGTACTACCGGGGTGCTGCTGCTGCCAT
TATTGTCTTTGACATTACTAATCAAGCCTCGTTTGAGAGGGCTAAGAAATGGGTTCAGGAATTGCAGGCACAAGGTAACCCTAATA
TGGTGATGGCTCTTGCTGGAAACAAAGCTGATTTATTAGATGCAAGGAAAGTGTCTGCCGAGGAGGCAGAGTCGTACGCACAAGAG
AACAGCCTTTTCTTCATGGAAACCTCAGCTAAGACTGCAACAAATGTCAAAGACATCTTCTACGAAATCGCAAAAAGGCTACCACG
TGTACAGCCAGCAGAAAACCCAGCACGAATGGTTCTCCCAAGCGGGCCAGCAGCTACTGCAGTGAGTAGTTCATCATGTTGTGCTT
AAGAGAGCTCTCTCTCTTGGTTAGTCACTGTAGAAAGGAAACATCCAGTCTCTTTATGTGTTTTCTTCTTGTCTTAACGTTGTCGC
TTTGCTTTGCATTGTATATCAGATGTTTCCGCTCTGTGGAAATCTAAAGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_199326 Ras-related protein RHA1 [Arabidopsis thaliana]8765e-092
XP_002867930 hypothetical protein ARALYDRAFT_492904 [Arabidopsis lyrata subsp. lyrata]8245e-086
NP_193699 Ras-related small GTP-binding family protein [Arabidopsis thaliana]8211e-085
CAA50609 ras-related GTP-binding protein [Nicotiana tabacum]7977e-083
XP_002332129 predicted protein [Populus trichocarpa]7923e-082

Swiss-Prot top hits (Blast detail)Scoree value
P31582 Ras-related protein RHA18762e-093
P29687 Ras-related protein Rab57346e-077
P31583 Ras-related protein RHN17292e-076
Q0IIG7 Ras-related protein Rab-5A5788e-059
P18066 Ras-related protein Rab-5A5788e-059

TrEMBL top hits (Blast detail)Scoree value
Q9SN68 AT4g19640/F24J7_1908218e-086
Q40570 Ras-related GTP-binding protein7975e-083
B9NA46 Predicted protein7922e-082
A9P9C3 Putative uncharacterized protein7813e-081
B9ICG5 Predicted protein7715e-080

Arabidopsis top hits (Blast detail)Scoree value
AT5G45130.1 RHA1 (RAB HOMOLOG 1); GTP binding8781e-094
AT4G19640.1 ARA7; GTP binding8233e-088
AT3G54840.1 ARA6; GTP binding / GTPase4837e-049
AT3G54840.2 ARA6; GTP binding / GTPase4452e-044
AT1G16920.1 ATRABA1B (ARABIDOPSIS RAB GTPASE HOMOLOG A1B); GTP binding3861e-037

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  100%

Unigene Members