Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN52222

FASTA Sequence
Unigene ID: UN52222Length: 741 SSR 
GGAGAGTAAGTTTCGTGTACTCTCCAATCTCTTCTTCCCACAAAAATGATAACACCACAACCAACAGCAATAATACCAATTACGTC
CTGGTTACAAATACTCATAACAACAATCATCAACAACACATGTTATTCCCACATATGAGCTCTCTTCTTCCTCAAACGACGACTGA
GAATTGTTTCCGATCCGATCATGATCAGCCTACCAACGCATCTGTTAAATCAGAAGCAAGCTCCTCAAGAATCAATCACTACTCTA
TGTTGATGAAAGCAATCCACAATACTCAAGAAGATAACAACAACAACAACAACAACAACAATGATACGGAATCCATGAAAGCTAAG
ATAATCGCTCATCCCCACTACCCCACCCTCCTACACGCCTACTTAGACTGCCAGAAGATTGGAGCACCACCTGAGGTAGTTGATAA
AATTACGGCGGCAAGGAAAGATTTCGAGGCGAGGCAGCAGCGGCCAATAGCGTCCGTGACTGCGCTGTCTAGAGACCCTGAATTGG
ATCAATTTATGGAAGCATACTGTGACATGCTGGTCAAATATCAAGAGGAGCTAACACGGCCCATTGAAGAAGCAATGGAGTATATA
CGTCGTATTGAATCTCAAATTAGCATGTTGTGTCAGGGTCCCAATCACATCCTCAACAATCCTGATGGGAAAAGTGAAGGAATGGA
ATCATCAGACGAAGAGCAAGAGAATAATAACAGTGGAGGGGAAGCAGATTTAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
ACS28249 BREVIPEDICELLUS [Brassica rapa]11506e-124
ACS28250 BREVIPEDICELLUS [Brassica oleracea]11409e-123
ACR83812 brevipedicellus [Brassica napus]10727e-115
XP_002874518 hypothetical protein ARALYDRAFT_489727 [Arabidopsis lyrata subsp. lyrata]9518e-101
AEI17372 Knox-like protein 1 [Arabidopsis lyrata]9454e-100

Swiss-Prot top hits (Blast detail)Scoree value
P46639 Homeobox protein knotted-1-like 19326e-100
O04134 Homeobox protein knotted-1-like 14228e-041
Q41330 Homeotic protein knotted-14211e-040
O04135 Homeobox protein knotted-1-like 24182e-040
P46609 Homeobox protein knotted-1-like 63619e-034

TrEMBL top hits (Blast detail)Scoree value
C5MKB4 BREVIPEDICELLUS (Fragment)11504e-124
C5MKB5 BREVIPEDICELLUS (Fragment)11406e-123
C5IX10 Brevipedicellus (Fragment)10725e-115
Q0Q5B4 BREVIPEDICELLUS9193e-097
Q49RB7 Knotted-like homeobox protein4945e-048

Arabidopsis top hits (Blast detail)Scoree value
AT4G08150.1 KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA); transcription factor9863e-107
AT1G62360.1 STM (SHOOT MERISTEMLESS); transcription factor3035e-028
AT1G23380.1 KNAT6; DNA binding / transcription activator/ transcription factor2929e-027
AT1G23380.2 KNAT6; DNA binding / transcription activator/ transcription factor2812e-025
AT1G70510.1 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2); transcription factor2775e-025

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  100%

Unigene Members