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Information for unigene UN52229
| FASTA Sequence |
| Unigene ID: UN52229 | Length: 761 |
SSR | | GGCCTTTTGCCTCCTCCCTTCGACTTTCCTCTTTCCGAATTTCACTTTCCTCTCCAACACGAAAATCTCACGATCGCTCGAGATGG
ATCTACCACCATCTTCCTCTGCTTCTTGATCTCTTACTTTACGTCTGTTATCTTCCCAGTATATCTAGGGTTTAATCCATACTTAA
AAAGCTTTTTTCAAGATGGAGGACACCAACAGGTCAGTTGCTTCCCTCATGGACTCAACATCATCCAAGATCCAGCAGCTTCAAAA
GGCCTTTGCCGAGCTCGAAAGCCAGCGCGCCGTAACGCTCAATCTCAAGTGGAACGAACTCGAGGAGCATTTCCACGGGCTCGAGA
GGTCCTTGAAGCGACGGTTCCACGAGCTCGAGGATCAAGAGAAAGAGTACGAGACCAAGACAAGGAAGGCTCAAGAGCTGCTGGAG
AAGAAGAAAGCAGCCGTCGAGGCCAAGGAGAAGGCGTCGCTGGAGAGGCTTCAGAAGAAGAGAGACGCAGCTGTGTTCGCTATCCA
CACTGCTTTGGATAAGTACAACAACAACAACAACAACAACGTCACTTCTGTTGCTGTTGCTGTTGCTGTTGCTGCTGCTGATGATG
ATGATGAGGATGTGGATGGTACTGTGCAAGATGTTGTTGAGGTGAAGGCTTATCCAGAGTTAGTGAAGCTGTGCAGGGATATGAAC
TCAGCGGGGCTACACAAGTTTGTGTCAGACAACCGCAAGAACCTTGTTCTACTAAAAGAAGAGATTCCTGTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002527289 conserved hypothetical protein [Ricinus communis] | 559 | 2e-055 |
| BAA96959 unnamed protein product [Arabidopsis thaliana] | 536 | 1e-052 |
| NP_850923 FRIGIDA-like protein [Arabidopsis thaliana] | 536 | 1e-052 |
| AAM96992 putative protein [Arabidopsis thaliana] | 536 | 1e-052 |
| XP_002863893 hypothetical protein ARALYDRAFT_331248 [Arabidopsis lyrata subsp. lyrata] | 531 | 4e-052 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SMS0 Putative uncharacterized protein | 559 | 2e-055 |
| Q67ZB3 Putative uncharacterized protein At5g48390 | 536 | 7e-053 |
| Q8L7D6 Putative uncharacterized protein At5g48390 | 536 | 7e-053 |
| Q9LV73 Genomic DNA, chromosome 5, P1 clone:MJE7 | 536 | 7e-053 |
| A9PER9 Putative uncharacterized protein | 457 | 1e-043 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G48385.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Frigida-like (InterPro:IPR012474); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT3G22440.1); Has 987 Blast hits to 921 proteins in 78 species: Archae - 0; Bacteria - 16; Metazoa - 58; Fungi - 7; Plants - 873; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). | 536 | 5e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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