RadishBase

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Information for unigene UN52551

FASTA Sequence

Unigene ID: UN52551	Length: 555	SSR
GGGTCAACAACAGAGACGACAACCGCGCAGAGAAGAAGAAGAAGAAGAAGAAAAGGAAGAGTCTTTGTAGTATCATATATCATGAA TCGAGGGTTTCGTTTTCTCTCTCAACCCTAGAATATAGATTTCATCGATCATCTTCTCTTCATCATCGCGATTTCAATGGAGGCAG TTGGAGGAGATTCGACTACGACGACGTCGTCGGAAGGGAATATGATATCAGCAGCAGCTTTTGCGGAAGGAGGAATCCAAGAGGCT TGTGATGATGCTTGTAGCATCTGTCTCAAACCCTTCTGCGACAGCGATCCTTCTACTTTGACTAGTTGCAAGCATGAGTATCATCT CCAATGCATCCTTGAGTGGTGTCAAAGGAGTTCACAGTGCCCTATGTGTTGGCAATCTATTAGTCTCAAAGACCCCACTGGTCAGG AATTGCTTGAGGCTGTTGTACAAGAGAGGAATCTCCGCTTCAATCCATCTAGAAACGCCACCATATTTCGTCATCCTACTCTCGGT GATTTTGAATTACAGCATCTCCCGGCGGGGGTGGATAAT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_851051 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]	602	1e-060
NP_568410 E3 ubiquitin-protein ligase RHF2A [Arabidopsis thaliana]	601	1e-060
BAH19547 AT5G22000 [Arabidopsis thaliana]	601	1e-060
XP_002871983 hypothetical protein ARALYDRAFT_489047 [Arabidopsis lyrata subsp. lyrata]	601	1e-060
BAJ33931 unnamed protein product [Thellungiella halophila]	599	2e-060

Swiss-Prot top hits (Blast detail)	Score	e value
Q9ZT42 E3 ubiquitin-protein ligase RHF2A	601	8e-062
Q4TU14 E3 ubiquitin-protein ligase RHF1A	285	3e-025
Q9VE61 E3 ubiquitin-protein ligase CG7694	140	2e-008

TrEMBL top hits (Blast detail)	Score	e value
C6TB16 Putative uncharacterized protein	560	6e-056
Q2HT04 Zinc finger, RING-type	558	1e-055
B9GEQ0 Predicted protein	532	1e-052
B4FAG8 Putative uncharacterized protein	510	4e-050
B4FRI2 Putative uncharacterized protein	510	4e-050

Arabidopsis top hits (Blast detail)	Score	e value
AT5G22000.2 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding	602	6e-063
AT5G22000.1 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding	601	8e-063
AT5G22000.3 RHF2A (RING-H2 GROUP F2A); protein binding / zinc ion binding	601	8e-063
AT4G14220.1 RHF1A (RING-H2 GROUP F1A); protein binding / ubiquitin-protein ligase/ zinc ion binding	285	3e-026
AT5G41350.1 zinc finger (C3HC4-type RING finger) family protein	130	3e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			100%

Unigene Members