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Information for unigene UN52565

FASTA Sequence
Unigene ID: UN52565Length: 676 SSR 
GGGTCTCTGTCTCTTCGTCGCCATTAGCTTAAAGAGAATCATCGTCATCATCATCCACCTCAACTACTCCATCCCCAAGAAGAAGT
AGATTCGCGTGGAGCTCTTTTCTTCTTCCAGTTCTCCAAAGCTCTCTCTCACCTAACTGCCATGGCTACTAACAACAACCATAACC
TCTCGGATCAACAACCTCCTTCCGACGATTTCTTCGAGCAGATCCTCGGAATCTCCAACTTCTCCGCGTCTTCCAGCTCCGGTGGT
CTCTCTGCACTCCCCGGAGGATTAAGCGGACCGCCGCCGATGATGCTTCAGCTCGGTTCCGGGGAAGAAGGGAGTCATAATAATCA
CATGGGTGGTGGTGGTGGTGGTGGAGGGCCTCTAGGGTTTCACAACGGGATGTTTCCGTTGGGGTTGAGCCTCGATCAAGGGAAAG
GAGGAGGACAACAAGGCTTTCTTAAACCCGATGGAAGTGGTGGGAAACGTTTCCAAGATGATGTTGTTGATAATCGATGTTCCTCC
ATGAAACCTGTCTTCCATGGGCAGCCAATGTCACAGCCACCTCCACCAATGCCGCATCAACAATCTTCAATCCGACCTAGAGTTAG
GGCTAGGCGAGGTCAGGCCACTGATCCTCATAGCATCGCTGAGCGGCTGCGTAGGGAAAGAATAGCAGAACGGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAJ34239 unnamed protein product [Thellungiella halophila]7071e-072
XP_002892144 basic helix-loop-helix family protein [Arabidopsis lyrata subsp. lyrata]6586e-067
NP_563672 transcription factor bHLH7 [Arabidopsis thaliana]6532e-066
AAM10948 putative bHLH transcription factor [Arabidopsis thaliana]6372e-064
AAM65759 putative bHLH transcription factor [Arabidopsis thaliana]6372e-064

Swiss-Prot top hits (Blast detail)Scoree value
Q93Y00 Transcription factor bHLH76621e-068
O22768 Transcription factor UNE126531e-067
Q8S3D5 Transcription factor bHLH691422e-008
Q9LSQ3 Transcription factor bHLH821422e-008
Q9ZUG9 Transcription factor bHLH661332e-007

TrEMBL top hits (Blast detail)Scoree value
B9DFF4 AT4G02590 protein6371e-064
B9S4R9 DNA binding protein, putative4586e-044
B9GS74 Predicted protein4059e-038
C0JP11 Putative basic helix-loop-helix protein BHLH33143e-027
C0JP12 Putative basic helix-loop-helix protein BHLH42939e-025

Arabidopsis top hits (Blast detail)Scoree value
AT1G03040.1 basic helix-loop-helix (bHLH) family protein6574e-069
AT4G02590.1 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor6531e-068
AT4G02590.2 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor6531e-068
AT4G02590.3 UNE12 (unfertilized embryo sac 12); DNA binding / transcription factor4602e-046
AT4G30980.1 basic helix-loop-helix (bHLH) family protein1422e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  100%

Unigene Members