RadishBase

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Information for unigene UN52679

FASTA Sequence

Unigene ID: UN52679	Length: 814	SSR
GTGGCGAAGAAGAAGAAGAAGAAGAAGAAGAGAGATCTAAAGAGAGAAGAAGCATTAGATATGGCTCGCTCACTCGGAGCAAACGG CACCGTTTTGCTCGCAATCGTCTTCTTCGGATGTTTATTTGCGTTTTCCACTGCCAAAGAAGAGGCAACCAAGTTGGGAACAGTGA TAGGGATTGATCTTGGTACCACCTACTCTTGTGTTGGTGTTTACAAGAACGGTCATGTTGAGATCATAGCTAATGACCAAGGAAAC CGTATTACACCTTCCTGGGTTGGTTTCACTGACAATGAGAGGCTCATTGGTGAGGCTGCTAAGAACCAGGCGGCTGTTAATCCCGA GAGGACTGTCTTTGATGTCAAGAGACTGATTGGGCGAAAATTCGAGGACAAAGAGGTCCAGAAGGACAGGAAGCTTGTGCCTTACC AGATTGTGAACAAGGATGGCAAGCCATACATTCAAGTCAAGATCAAGGATGGTGAGACCAAGGTTTTCTCTCCTGAGGAGGTCAGT GCTATGATCTTGATTAAGATGAAGGAGACTGCTGAAGCTTACCTTGGAAAGAAAATCAAGGACGCTGTTGTCACTGTTCCAGCTTA CTTCAACGATGCCCAGAGGCAGGCTACAAAGGACGCTGGTGTTATTGCTGGTCTCAATGTTGCCAGAATCATCAACGAACCCACTG CTGCTGCTATTGCCTACGGTCTTGACAAGAAAGGTGGTGAGAAGAACATCCTTGTCTTTGACCTTGGGGGGTGGTACCTTTGATGT CAGTGTCTTGACTATGACAACGAGTGTTCGAGTTCTCTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAJ34315 unnamed protein product [Thellungiella halophila]	1161	4e-125
XP_002868566 hypothetical protein ARALYDRAFT_493781 [Arabidopsis lyrata subsp. lyrata]	1159	7e-125
BAA12348 luminal binding protein (BiP) [Arabidopsis thaliana]	1155	2e-124
NP_851119 Luminal-binding protein 2 [Arabidopsis thaliana]	1155	2e-124
NP_199017 Luminal-binding protein 2 [Arabidopsis thaliana]	1155	2e-124

Swiss-Prot top hits (Blast detail)	Score	e value
Q39043 Luminal-binding protein 2	1155	9e-126
Q9LKR3 Luminal-binding protein 1	1137	1e-123
Q03685 Luminal-binding protein 5	1074	2e-116
Q03684 Luminal-binding protein 4	1063	4e-115
P49118 Luminal-binding protein	1054	5e-114

TrEMBL top hits (Blast detail)	Score	e value
Q3E8J0 Putative uncharacterized protein At5g42020.2	1155	1e-124
Q0ZUG6 Putative luminal-binding protein	1153	2e-124
Q9FSY7 Putative luminal binding protein	1094	2e-117
B9RYP6 Heat shock protein, putative	1091	4e-117
Q9ATB8 BiP-isoform D (Fragment)	1084	2e-116

Arabidopsis top hits (Blast detail)	Score	e value
AT5G42020.1 BIP2; ATP binding	1155	8e-127
AT5G42020.2 BIP2; ATP binding	1155	8e-127
AT5G28540.1 BIP1; ATP binding	1137	1e-124
AT1G09080.1 BIP3; ATP binding	903	1e-097
AT1G16030.1 Hsp70b (heat shock protein 70B); ATP binding	718	4e-076

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			100%

Unigene Members