Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN52748

FASTA Sequence
Unigene ID: UN52748Length: 825 SSR 
GACTCAGAAAAACAGCCAGAGTCCTGCATTAGCATTTATTGACTGGAGCCAATTTAAAGCTTTTTATATTTCTCGTGAACTTGAAC
TTAAACGGTTACTTACTTCTCTGATTCTTGATTTTTTGTTGGTGTTCGACTCAAGATGAGTCAACTCGGTGATTTGCTCAGAGAAT
CGGCGGACGAAACGGAGAGTGGGAGGACGATGATGCTGAGTTTACTCGAGGAAGCTCGAACCGACGGTGAAGATCGAGCGACGAGC
AAGTGGAGTACGCTGAAACAACGGCTGAGATTCGACTGGGTTGGCCGTTGCGGTGGACCCACCTTGCTGCGTCTCAGAGGATCAGA
AGCGCCAATCGCCGAGGAAGACGAAGCTGACCAGGAGGAGGAGGAGGAGGAAAACTCGGGTCAAAACCGGGTCGTTGACTTGTCGA
ATTCGGTTCCGGATTCGGGTTTAGCTGTGGAGACGGATTGTTTAACACGTGGCACAAGGAATCTCGCGGAGGCTCTTGCGGAGGAG
AGACTAGCGCGGGGCGAGCACGTGATTGAGGCTTCGGTTGCTAAGGTACCGTTGATGAAACTGCTGGCGGAAACGAAGGGTTGTGA
TGTGACCACGTGGACAGGTGCTGATCCTTTGTGTTGCGTGTGTATGGGAAGGGAGAAAGACGCGGCGTTTATCCCATGTGGGCATA
CGTATTGTAGAGTGTGTTCAAGAGAGATTTGGATGAACCGTGGATCGTGTCCTCTTTGTAACCGTTCATCGTTGACGTTCTTGATC
TTTACTGAAATTTACATTCATGGATTTGTTATGTTCCGATCCACGTAAAGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002888031 hypothetical protein ARALYDRAFT_893249 [Arabidopsis lyrata subsp. lyrata]6821e-069
NP_176427 RING/U-box domain-containing protein [Arabidopsis thaliana]4581e-043
NP_193956 RING/U-box domain-containing protein [Arabidopsis thaliana]3424e-030
CAA16775 hypothetical protein [Arabidopsis thaliana]3399e-030
XP_002270409 PREDICTED: hypothetical protein [Vitis vinifera]3353e-029

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
O48801 F2401.104581e-043
Q8GXD8 Putative uncharacterized protein At4g222503423e-030
O49630 Putative uncharacterized protein AT4g222503396e-030
B9N8H0 Predicted protein2885e-024
A5AKB0 Putative uncharacterized protein2634e-021

Arabidopsis top hits (Blast detail)Scoree value
AT1G62370.1 zinc finger (C3HC4-type RING finger) family protein4586e-046
AT4G22250.1 zinc finger (C3HC4-type RING finger) family protein3422e-032
AT4G03965.1 protein binding / zinc ion binding2345e-020
AT3G25030.1 zinc finger (C3HC4-type RING finger) family protein2103e-017
AT3G25030.2 zinc finger (C3HC4-type RING finger) family protein2103e-017

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  100%

Unigene Members