 |
Information for unigene UN52823
| FASTA Sequence |
| Unigene ID: UN52823 | Length: 753 |
SSR | | CCCCGTGGTTCCCGGAGACGACGCCGGAGGAACTTTGCTTCGACTTCACGTGGCCGCTATACGAAGCGCTTTGGTTTTCTCTCTCT
CTCTTCAGAAAATTTCCCGTGACTTGGTCACCACCAACCCGAACCAGAGGAGGAGAGCGATTTTCGGAAGACACAGAGAGAGAGAG
AGAAAAAAAAAAGCAGCTTCTTCGCTGATCAAACGTTAGACCCGTGACCTTTTGTTTTTTGTTTTCTTCTTCTTCAGAAAAGAAAA
GAAGAATCTGGAATTGTTTGAAAAAGGGGTTTGGATTTGGATGTGGTGTATAGGTTCGAAGTTGTAGAGATTGATTGTGTGTGGAA
ATGTCTGGCGTTGGCGAGAACCAACTCATCTCCATTGTACCTGATGAACTCAAATTCCTTTTTGAACTCGAGAAACAAAGCTACTG
TGATCTTAAAGTTGCCAATAAAACTGACAACTATGTTGCTTTCAAGGTGAAAACAACATCTCCAAAAAAGTATTTTGTTAGACCCA
ACACTGGTGTCATTCAGCCATGGGACTCCTGCATCATTCGAGTTACTCTGCAAGCGCAAAGGGAGTATCCTCCAGATATGCAGTGC
AAAGACAAGTTTCTCCTTCAAAGCACCCTTGTTCCTCCACACACTGATGTTGATGATCTTCCCCAAGACACATTTACAAAGGACAG
TGGGAAAACATTAACAGAGTGTAAGCTCAAGGTCTCTTATATCTCCTCCTCTACTACAACCCAAA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_199529 VAMP (vesicle-associated membrane protein) family protein [Arabidopsis thaliana] | 678 | 4e-069 |
| XP_002863353 vesicle-associated membrane family protein [Arabidopsis lyrata subsp. lyrata] | 676 | 6e-069 |
| ABD65040 vesicle-associated membrane protein, putative [Brassica oleracea] | 585 | 2e-058 |
| XP_002531789 vesicle-associated membrane protein, putative [Ricinus communis] | 560 | 2e-055 |
| XP_002303378 predicted protein [Populus trichocarpa] | 539 | 5e-053 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q16943 Vesicle-associated membrane protein/synaptobrevin-binding protein | 178 | 2e-012 |
| Q9P0L0 Vesicle-associated membrane protein-associated protein A | 176 | 3e-012 |
| Q5R601 Vesicle-associated membrane protein-associated protein A | 176 | 3e-012 |
| Q9Z269 Vesicle-associated membrane protein-associated protein B | 176 | 3e-012 |
| Q9QY76 Vesicle-associated membrane protein-associated protein B | 173 | 6e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LVU1 Putative VAMP (Vesicle-associated membrane protein)-associated protein | 678 | 2e-069 |
| Q2A9M0 Vesicle-associated membrane protein, putative | 585 | 1e-058 |
| B9T0M0 Vesicle-associated membrane protein, putative | 560 | 1e-055 |
| B9GYP5 Predicted protein | 539 | 3e-053 |
| C6SXB0 Putative uncharacterized protein | 535 | 9e-053 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47180.1 vesicle-associated membrane family protein / VAMP family protein | 678 | 2e-071 |
| AT5G47180.2 vesicle-associated membrane family protein / VAMP family protein | 678 | 2e-071 |
| AT3G60600.1 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 356 | 3e-034 |
| AT3G60600.2 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 356 | 3e-034 |
| AT3G60600.3 VAP (VESICLE ASSOCIATED PROTEIN); protein binding | 356 | 3e-034 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
