Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN53060

FASTA Sequence
Unigene ID: UN53060Length: 710 SSR 
GGGTCACTGTTGTAAAAATAAAAATTGGGGGGTTTCTCAATCACGCTCGCTCGCTAGCTCGCTGCCAGATCCAGAGTCAAAATGGA
GTCACCGCCACCTCACTCGAATTTGCTCCCCGAAGTTGACTCCCTCCCCGATGGATCCGTCGACGACGGAGCTGCTGTTGACCCAC
CTCTCGTTTCTCCGGCTACCACCGACGAACAAAATCGTGATGATGATGTCCCGATCGAGAAAGCAGAGAAGCCCAGGACTTTCCCC
GTTCCTCTGTGTGAAGAAACAGATGGCAATGACGACGAGGTGGAGGAGGTGGATGACCTAAGCAAGGTCTCGAGCAAGCTTAGCTT
AGAGCAGAAAGAATCATCTCCTCCTCCTCCTCAAACATTATCAGAAGGGTCTACTCAAAATCCAAACTTGGCCAAGGACAAGGCGA
CGGACTCTACTCAGAGTGTGGATTCGGTCAAACCCAGAAAACAAGAGCGTAAGAGTTCAAAGAACATGTTCAAATCAGAAAAGGAG
TTTCTTGAATTCATGCTCAAGTATCAACAAGTCCTTTCCGAAAGAGATTCTGCTATTACTGTCCGTGACGAGCTTGAGTCACTTTG
CAGAGAGTTACAACGTCAAAACAAAATGTTAATGGAAGAATGCAAGCGGGTGTCGACTGAGGGACAGACTTTAAGATCAGATTTGT
CCACCAAGTTCCAGGACGCAAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_199897 uncharacterized protein [Arabidopsis thaliana]6982e-071
NP_974921 uncharacterized protein [Arabidopsis thaliana]6944e-071
XP_002864079 hypothetical protein ARALYDRAFT_495147 [Arabidopsis lyrata subsp. lyrata]6855e-070
XP_002276892 PREDICTED: hypothetical protein [Vitis vinifera]3503e-031
XP_002529722 taxilin, putative [Ricinus communis]3442e-030

Swiss-Prot top hits (Blast detail)Scoree value
Q6PAM1 Alpha-taxilin1323e-007
P40222 Alpha-taxilin1297e-007
Q8N3L3 Beta-taxilin1243e-006
Q9I969 Beta-taxilin1208e-006
Q8VBT1 Beta-taxilin1191e-005

TrEMBL top hits (Blast detail)Scoree value
Q8RXD7 At5g508406981e-071
Q3E6R9 Putative uncharacterized protein At5g50840.26943e-071
B9SUQ3 Taxilin, putative3441e-030
B9HU43 Predicted protein3403e-030
Q9FGD8 Genomic DNA, chromosome 5, TAC clone:K16E142785e-023

Arabidopsis top hits (Blast detail)Scoree value
AT5G50840.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: LINC2 (LITTLE NUCLEI2) (TAIR:AT1G13220.2); Has 50047 Blast hits to 27335 proteins in 1173 species: Archae - 429; Bacteria - 3521; Metazoa - 26018; Fungi - 2663; Plants - 1200; Viruses - 162; Other Eukaryotes - 16054 (source: NCBI BLink).6987e-074
AT5G50840.2 INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: myosin heavy chain-related (TAIR:AT5G59210.1); Has 48881 Blast hits to 26998 proteins in 1148 species: Archae - 400; Bacteria - 3488; Metazoa - 25141; Fungi - 2545; Plants - 1208; Viruses - 169; Other Eukaryotes - 15930 (source: NCBI BLink).6942e-073

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
71  100%

Unigene Members