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Information for unigene UN53255
| FASTA Sequence |
| Unigene ID: UN53255 | Length: 867 |
SSR | | GATTTCAATCTTGTATGTTGTTGCCCTTGTGGGAATGAATGAAATGAATCAACTTTGACGGGAAAAAAAAAAACTTAGATGCAAGC
AAAAAAACATTCAGTAACTACAACAAAACAACTAAACCTTCTCATTGTTCTAAAGATGACTTATCTCTTTTCCTGCTAAAAAACTT
AACCAAGTTGGGAACCTTCTTCTTCTTCTTCTTGATCACAAAGTAACTCGGCGTCCCTCTGTTCCCCGACGAGTATCTCCTCGTCT
TCCCTCCCTGAACCGGAGTGAACTTCCCACTAATCCTCACCGACCTTCTCACCGGTTTAGGAGAGACCACCAAGCTGCTGCCACTT
TTGTCTTCTGCTGATTCCTCCTTGAACTTCTCAATCTCGTTCTGCACCAGTCTCTTTATCGACAGCGACCTCTGCATCCTAAACGA
CGCCCTCTCCTCTTCCACCATTGTCTTCCCACTCTCCCTCTCTAACGTCACCGTCTTCATCACAATCTCCTTAGTGCTCGCCTTCA
GCGCTTCCACCCACGCCATCGCCGCTTCCACTTTCTTCTCTGCAGTCACTTCAGCGTGACGCGCTTGTCCGCTCAGATACTCGTAC
TCGAATCTCGAGATTGTGATGGTTGAGCTACTCTGAGAATCCATTTCTCTAGTTTCTATTGTTCTCTCCACCATTGATTCAAGCTT
CTCCAGTGCTGAACCCTCTGCTTGCTTCGCCTTCTCCAGCTCTTCTAACTTGGACAGCAACTCTTTCTCTTTCCCACCGAATCCAG
TTTCGGATTTCTTGATGATTCTTGCCTCTTCTTCTTTGAGATTCACCTCTTCTTTCTTTGCAGCTTCTTCATCGTTCTTGAGCTTC
TCCAAAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002888550 predicted protein [Arabidopsis lyrata subsp. lyrata] | 883 | 8e-093 |
| NP_176856 plastid movement impaired 2 protein [Arabidopsis thaliana] | 873 | 1e-091 |
| BAB11282 unnamed protein product [Arabidopsis thaliana] | 462 | 5e-044 |
| NP_198631 plastid movement impaired 15 protein [Arabidopsis thaliana] | 462 | 5e-044 |
| XP_002868801 hypothetical protein ARALYDRAFT_356183 [Arabidopsis lyrata subsp. lyrata] | 457 | 2e-043 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9C9N6 Protein PLASTID MOVEMENT IMPAIRED 2 | 878 | 1e-093 |
| Q9FF41 Protein PLASTID MOVEMENT IMPAIRED 15 | 462 | 2e-045 |
| Q17RH7 Putative protein TPRXL | 140 | 5e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SQ09 Myosin heavy chain, putative | 426 | 5e-040 |
| B9GNB8 Predicted protein | 395 | 2e-036 |
| B9H332 Predicted protein | 384 | 4e-035 |
| A5C9E2 Putative uncharacterized protein | 382 | 7e-035 |
| C5XHF8 Putative uncharacterized protein Sb03g031810 | 339 | 7e-030 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G66840.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545); BEST Arabidopsis thaliana protein match is: PMI15 (plastid movement impaired 15) (TAIR:AT5G38150.1); Has 66436 Blast hits to 37670 proteins in 1596 species: Archae - 890; Bacteria - 7464; Metazoa - 33216; Fungi - 4897; Plants - 2570; Viruses - 192; Other Eukaryotes - 17207 (source: NCBI BLink). | 879 | 9e-095 |
| AT5G38150.1 PMI15 (plastid movement impaired 15) | 605 | 6e-063 |
| AT1G62760.1 invertase/pectin methylesterase inhibitor family protein | 112 | 8e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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