RadishBase

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Information for unigene UN53828

FASTA Sequence

Unigene ID: UN53828	Length: 813	SSR
GCTGTCTGTCACTCGATTTGTTATTTCTCACGGTGGGAGGCTTTTTATTTGTCCTTCATCGTTCGTTTACTTCAACTTGCTTTGTT TTCTACGCTCCACGGACTAATCAAACCAATGAGATGAAAAAATATAAATTAAAAACTAAAAAAATAAAAAATAAAAATATCTTTGT TTTTCTTCTTCCTTCTTCTTCTTTCATATTGATGTGTACTCTTCACCTCTAAGTTTTGACCAAAAAAGCTTCGTTCTTTTCTCTTT GGAACGTACCCAAGATTGCGTTACAACTTGAGATTCACTCTTCATATCTCGTCTTCGTGATGAATTATCATCAATGGAGGTTGGGT TTGTTTTTACAATTATTTTTATTTTTTTTTTGTCAAAGTTTGTGACTTCGTTGGGTATCATTGCTCTATTTGGCTATCTTTTGCCC AAAGGCTCAATCTTTAGTAGTTTGGTCTTATTACTCTTATAAAAAGTTTCTTTGTGAGAAGTTTCTTTGAGCTTTTGTAATTTTAT TGATTTTTTTTATTTTATTTAATAGATGATGATGAGCTCTTCTTCTTCTTCTACTACACAAGTTGCATCGTTGAGAGAGATTGGGA TGTATGAACCGTTCCAACAGTTGTCTGGTTGGGAAAATGCTTTCAACACTATAGGTAGTAGTAGTAATCAGAACAACAACAATCCG AGTTCTTCCACAGTTCCTGAGGTGGATGCTAGAGCAGAAGCAGATGATCACAATAAGGTTCCTTTTTTTTGGTTTTACTTCTTAGA CAGATTCATGTTTTACTTGTTTGTTTAAAAGTAGTGGTT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ABU96774 bZIP transcription factor [Brassica juncea]	280	6e-023
BAJ33680 unnamed protein product [Thellungiella halophila]	226	1e-016
XP_002890491 hypothetical protein ARALYDRAFT_472441 [Arabidopsis lyrata subsp. lyrata]	225	1e-016
NP_564156 transcription factor TGA3 [Arabidopsis thaliana]	224	2e-016
AAF86550 F2E2.14 [Arabidopsis thaliana]	217	1e-015

Swiss-Prot top hits (Blast detail)	Score	e value
Q39234 Transcription factor TGA3	224	8e-018
Q93ZE2 Transcription factor TGA7	149	4e-009

TrEMBL top hits (Blast detail)	Score	e value
A7Y1S1 BZIP transcription factor	280	4e-023
Q147Q9 At1g22070	224	1e-016
B6SK41 Transcription factor TGA4	206	2e-014
Q0WQ44 BZip transcription factor AtbZip50	149	6e-008

Arabidopsis top hits (Blast detail)	Score	e value
AT1G22070.1 TGA3; DNA binding / calmodulin binding / protein binding / transcription factor	224	8e-019
AT1G77920.1 bZIP family transcription factor	149	4e-010

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


8	1			100%

Unigene Members