Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN54054

FASTA Sequence
Unigene ID: UN54054Length: 557 SSR 
CAATTTCCTCCTCCTCCTCCTCCTCCTCCGCATTGATTGATTCTCTTCCTAACCAAACCTAACCGAGAAAGAAGATGAGTGGGATA
GAACCAGACATGGAAGATCTGTTCCAGGAGAAGAAGCGTGTCAGAAACCCTCTCGTTCCTCTCGGTGCGTTTGCGACGGCGGGAGT
GCTAACTGCTGGGCTGATTAGTTTCAGAAGAGGCAACTCTCAGTTGGGTCAGGTTTTGATGAGAGCTAGAGTGGTCGTCCAAGGTG
CCACTGTCGCTCTTATGGTTGGAACCGCTTACTACTACGGTGATAATCCCTGGAAGAAATGAGCTGCTTTGCTACTTGTGAGATGA
CACACTCGGGGGGTCAGAAGAAGAGGTATGTGCTGCTCTCTTTTTGAGCGTCAGAAAAGTCTTCCGTCTTGTTAGGATTTATAACT
TTGCAAGGGTACTACACATCAAATGAGTTTTTGATTAATTAAGTTGTTCTGTTTCTTGATCAATTTGATTATATTGATTCAAGGGA
ATTTTCAGAAACCCATGATTACTCTTTGTCTACCGAAATCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
BAF01465 hypothetical protein [Arabidopsis thaliana]3977e-037
NP_190386 RING-H2 finger protein ATL48 [Arabidopsis thaliana]3913e-036
AAP40393 unknown protein [Arabidopsis thaliana]3913e-036
XP_002877592 hypoxia-responsive family protein [Arabidopsis lyrata subsp. lyrata]3743e-034
ABK95217 unknown [Populus trichocarpa]3653e-033

Swiss-Prot top hits (Blast detail)Scoree value
Q7X843 RING-H2 finger protein ATL3I3912e-037
Q9BW72 HIG1 domain family member 2A1511e-009
Q4VC39 Putative HIG1 domain family member 2B1269e-007

TrEMBL top hits (Blast detail)Scoree value
Q0WN35 Putative uncharacterized protein At3g48030 (Fragment)3975e-037
A9PFR4 Putative uncharacterized protein3652e-033
B9I376 Predicted protein (Fragment)3591e-032
B9RB61 Putative uncharacterized protein3473e-031
C6T1P1 Putative uncharacterized protein3062e-026

Arabidopsis top hits (Blast detail)Scoree value
AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein3912e-038

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  100%

Unigene Members