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Information for unigene UN54367

FASTA Sequence
Unigene ID: UN54367Length: 782 SSR 
GGGTTCTGTTCTCTCGAGCTGCCATTCATCGAATAAGCCTCTCTCTCTTCCACCATCACAGCTTTGACAAAAAAAAAAATCATACT
GGGGAATGGCAGAGACTGTTGATGAGGATTCTGGAGTGGGAGAGGAGAGTATAAATGGACAGTACAGTCTATCAGGAGAAGCACTC
TCTCAGTGGAGGTCTTCTACTCAAGTGGAGAATGGTACGCCATCCACGTCCCCCTCCTACTGGGATACTGATGATGATGATGATGA
AGACTATGGCCTTAAACCTTCTCAGTTATTTGTGAAACATAAATGGAAGATAGAGAAATACTCAGAGATCTAGAAAAGGGAGCTAC
GTAGCAGTGTTTTTGAAGCTGGCGGATACAAATGGTATATTTTAATTTATCCCCAAGGATGTGATGTTTGGCATCATCTCTCATTG
TTCCTGTGTGTTGCAAATCATGAAAAACTTCTTCCAGGCTGGGGTCATTTTGCTCAGTTTACTATAACTGTGGCCAATAAAGATCC
AAAGAAATCCAAGTTTTCAGAAGGAACATGATTGGGGATGGAAAAAGTTTATAGAGTCACCGAAATTAAATGAAGGGTTCGTAGAT
GATTCTGACACTCTTACAATTGAGGCTCAAGTTCAGGTCATCAGGGAGAGGGTGGACCGACCTTTTCGGTGCCTTCATCGTGGCTA
TAGGAGAGAGCTTGTTAGGGTGTATTTGACAAATGTGGTGCAAAATTGCCGACTTTTTGTGGAAGAGAAGAGAAGCAAGCTTGAGA
GGTTGATA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_171926 MATH domain-containing protein [Arabidopsis thaliana]6032e-060
NP_199169 MATH domain-containing protein [Arabidopsis thaliana]5852e-058
BAH19724 AT5G43560 [Arabidopsis thaliana]5852e-058
XP_002865415 hypothetical protein ARALYDRAFT_494645 [Arabidopsis lyrata subsp. lyrata]5834e-058
CAN81930 hypothetical protein VITISV_031499 [Vitis vinifera]5682e-056

Swiss-Prot top hits (Blast detail)Scoree value
Q84WU2 Ubiquitin carboxyl-terminal hydrolase 131531e-009
Q9FPT1 Ubiquitin carboxyl-terminal hydrolase 121522e-009

TrEMBL top hits (Blast detail)Scoree value
A8MR11 Uncharacterized protein At1g04300.16031e-060
B9DG57 AT5G43560 protein (Fragment)5852e-058
Q8RY18 AT5g43560/K9D7_65852e-058
A5C805 Putative uncharacterized protein5682e-056
B9HKF3 Predicted protein5672e-056

Arabidopsis top hits (Blast detail)Scoree value
AT1G04300.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15585 Blast hits to 9972 proteins in 679 species: Archae - 16; Bacteria - 1260; Metazoa - 5683; Fungi - 2012; Plants - 671; Viruses - 109; Other Eukaryotes - 5834 (source: NCBI BLink).6038e-063
AT5G43560.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein5851e-060
AT5G43560.2 meprin and TRAF homology domain-containing protein / MATH domain-containing protein5851e-060
AT1G04300.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083); BEST Arabidopsis thaliana protein match is: meprin and TRAF homology domain-containing protein / MATH domain-containing protein (TAIR:AT5G43560.2); Has 15485 Blast hits to 9800 proteins in 673 species: Archae - 16; Bacteria - 1225; Metazoa - 5601; Fungi - 1994; Plants - 616; Viruses - 101; Other Eukaryotes - 5932 (source: NCBI BLink).5841e-060
AT5G52330.1 meprin and TRAF homology domain-containing protein / MATH domain-containing protein3823e-037

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  100%

Unigene Members