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Information for unigene UN54453

FASTA Sequence
Unigene ID: UN54453Length: 812 SSR 
CGCAAGCGGAGGAGGAAATACAACTCTCCGGGACATCTCAGCTCTCAAAGGGATGCTACGACTGTTGTTGGCTGCAACTTTTGTGT
GAGTGTATTATTTTCATTTTGTGACAAACATGGGAGGTTGCTGTTCTTCTTCTTCTTCTTCCAGGCATCCGCATCTTGTTGGAACT
CCTATTTACTATTATTGTCCAGAATCTTTTGGAGAGTTTGGGCCTTCAGGAGCTCGTGCTGGTGTGGGATCAGCAGCAGCACTCAC
CACCACAGGCCTTCTGTCTGATATTATTGGTTTGGAGACATCATCTATACCCAACACTTTTTATGCTCCTGCTCCTCTTCCATATG
ATTTGCTTTTTGGGATACCAGATGATTCCGAATCTATCAAAGGAAAGATTAGTGATATCAGTTTTGAGACATGTAAAGAGCTCGAG
GGACTAGACTGTAAAATTCAACCCAGCTCAGTGATTCTCTCGCCGAGTGAATCAGATCTCTCTAAACAAAAAACATGGAATAACCA
ATTGGTAGACGAAGAGGAGGAGGAGGACTCTTGCCCCATTTGCTTTGAATTTTATGAAGCTGAGAATCCAAAAATAAAGACAAACT
GTGAGCACGATTTTCATCTCTCTTGTATTCTGGAGTGGATGGAAAGAAGCGATGGTTGCCCTATATGTGATAAGGAGGTTGCGTTT
GATGATTGCTTGAACTAGCATCAATATTCTCTAGTTTGGAAATTTTAAGCGGTTACACTATCCCGGTTAGCTGCAACATAATTTGC
ATACATCTTTTTTGGGTGTTATTCATCTCACACGCAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002875035 ring-H2 finger B1A [Arabidopsis lyrata subsp. lyrata]6418e-065
NP_567171 RING-H2 finger B1A [Arabidopsis thaliana]6077e-061
AAC69853 RING-H2 finger protein RHB1a [Arabidopsis thaliana]6069e-061
BAC42779 putative RING-H2 finger protein RHB1a [Arabidopsis thaliana]6023e-060
NP_001031564 RING-H2 finger B1A [Arabidopsis thaliana]5736e-057

Swiss-Prot top hits (Blast detail)Scoree value
Q8LE94 E3 ubiquitin-protein ligase At3g022902051e-015
Q4TU14 E3 ubiquitin-protein ligase RHF1A1541e-009
Q9ZT42 E3 ubiquitin-protein ligase RHF2A1503e-009
Q9P0P0 E3 ubiquitin-protein ligase RNF1811361e-007

TrEMBL top hits (Blast detail)Scoree value
Q2HIJ8 At4g003356075e-061
Q9ZT44 RING-H2 finger protein RHB1a6066e-061
Q8GXM5 Putative RING-H2 finger protein RHB1a6022e-060
Q1NZ07 Putative uncharacterized protein At4g00335.35734e-057
B9RDU7 Protein binding protein, putative4849e-047

Arabidopsis top hits (Blast detail)Scoree value
AT4G00335.1 RHB1A; protein binding / zinc ion binding6128e-064
AT4G00335.2 RHB1A; protein binding / zinc ion binding6128e-064
AT4G00335.3 RHB1A; protein binding / zinc ion binding5779e-060
AT5G41350.1 zinc finger (C3HC4-type RING finger) family protein2337e-020
AT4G23450.1 zinc finger (C3HC4-type RING finger) family protein2166e-018

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  100%

Unigene Members