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Information for unigene UN54550

FASTA Sequence
Unigene ID: UN54550Length: 747 SSR 
GGAGCTTTCCAGTTTCGCTGCGCCTCTTGAAAAATCGGATCCGAGTATCAAAGGTTTCAGGAAAAAATGAAGCATTCAAAGGATCC
GTTTGAAGCAGCGATAGAGGAGGAGGAGGAGCAAGACGAGTCACCGCCGGAATCGCCCGGAGGCGGAGGCGATGACGAGGGACGGA
TTGAAATCGACCAGGCTCCGGAGGAGAGTGAGAGAGACGTGGGTGGTGTTCGCCGTCAGAGCAAGAAATCTAAAACCTCCTCCTCC
GTCGTTGTTGCTGCTGAAGGGAAGAACAAAGATGAAGAAGAGGAGGAAGAGAACATGGAAGCTGAGTTAACCAAGTATCCAACTAC
TGTTGATCCAGCTAAGATGGCCAAGATGCAGGTCATTTTGTCGCAGTTCACTGAGGATCAAATGAGCAGATATGAATCTTTTAGGA
GATCTGCATTTCAAAAAGGGAACATGAGGAAGTTATTACAGGGAGTGACAGGGAGTCAGAAGATCAGTATGCCAGTTATAATTGTG
AACTGTGGTATCGCAAAGATGTTTGTTGGTGAACTAGTGGAAACAGCTAGAGTTGTAATGGGGGGAAAGGAACGACTCAGGTCCTA
TCAGACCTTGCCATATCGGAGAGTCTTATAGGAGACTTAAGCTCGAAGGCAAAGTACCTAAAAGATCTGTTCCTCGTCTTTTCCGC
TAACTCAGAACAAGATCCAAAAGAGGAGTTACTTTCTCAGCCCCATTAGATATGAGTCT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869942 predicted protein [Arabidopsis lyrata subsp. lyrata]6103e-061
NP_193761 transcription initiation factor TFIID subunit D9 [Arabidopsis thaliana]6022e-060
CAA18253 putative protein [Arabidopsis thaliana]5762e-057
XP_002277017 PREDICTED: hypothetical protein [Vitis vinifera]3971e-036
EEC71272 hypothetical protein OsI_03273 [Oryza sativa Indica Group]3962e-036

Swiss-Prot top hits (Blast detail)Scoree value
Q15544 Transcription initiation factor TFIID subunit 112069e-016
Q99JX1 Transcription initiation factor TFIID subunit 112023e-015
Q5RA91 Transcription initiation factor TFIID subunit 112023e-015
Q5U1X0 Transcription initiation factor TFIID subunit 112023e-015
P49906 Transcription initiation factor TFIID subunit 111881e-013

TrEMBL top hits (Blast detail)Scoree value
Q9M565 Putative TATA binding protein associated factor 24kDa subunit6022e-060
O65441 Putative uncharacterized protein AT4g202805762e-057
B8A7K9 Putative uncharacterized protein3961e-036
Q5QMA1 Os01g0680400 protein3952e-036
C5XGR0 Putative uncharacterized protein Sb03g0312203898e-036

Arabidopsis top hits (Blast detail)Scoree value
AT4G20280.1 TAF11 (TBP-ASSOCIATED FACTOR 11); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor6021e-062
AT1G20000.1 TAF11b (TBP-ASSOCIATED FACTOR 11b); DNA binding / RNA polymerase II transcription factor/ transcription initiation factor3053e-028

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  100%

Unigene Members