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Information for unigene UN54559

FASTA Sequence
Unigene ID: UN54559Length: 843 SSR 
GGGACGCAGAACGAAAAAGAGAGAAAACACCGTGCGACGACGAAGAAGATTCTCTAATCTCTTCGTGTTAGGTTTAGCTCTTTTAC
AAAAGGGGAATTAGCGAAGAGTGATACGATTTTCTTCTTCAGGCGGTGTTTGATTCGCTTATCGATTTGTTTAGTGTAAAACATAT
TATATAAATAGACTCTAGAAATGATGATGATGATGGGTTTCGAGATCTCCGATGAGTTTCTAGGAACGTTCGTGCCGATTTTGGTG
TATTGGGTGTATTCAGGGATGTACATTTGCTTAGGATCTTTGGAGAGGTATCGATTGCATTCCAAGGTGGACGAGGACGAGAAGAA
TCTCGTCACCAAATCCGCCGTCGTCAAGGGCGTTCTCCTTCAGCAGGCTCTCCAGGCCATCATCTCCGTTATCCTCTTCAAGATAA
CAGGAAGTGATGATGCAGATGCGTCTACGACGCAGCAATTCTCCCTTCTACTCCTCGCTAGGCAGTTTATCATCGCCATGCTCGTT
ATCGACACTTGGCAATACTTCATCCATCGCTACATGCACATCAACAAGTTCTTATACAAGCACATCCACTCTCAGCACCATCGCCT
CATCGTTCCCTATTCATACGGAGCTTTATACAACCATCCACTAGAAAGCCTTCTCTTGGACACCGTCAGTGGTGCTCTGTCTTTCC
TCTTCTCCGGTATGTCCCCAAGAACCGCCATCTTTTTCTTCTCCTTCGCCACCATCAAGACGTTGACGATCACTGTGGACTCTGGC
TCCCCGGGAACCCTTTCACATCTTCTCACTAACACTCTGCTTACCATGATGTCATCATCAGCTCTATGG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892798 hypothetical protein ARALYDRAFT_888804 [Arabidopsis lyrata subsp. lyrata]8792e-092
NP_563944 sphingoid base hydroxylase 2 [Arabidopsis thaliana]8756e-092
AAF43928 Contains similarity to acid phosphatase from Lupinus albus gb|AB023385 and contains a Sterol desaturase PF|01598 domain. EST gb|AI995340 comes from this gene [Arabidopsis thaliana]8702e-091
NP_177122 sphingoid base hydroxylase 1 [Arabidopsis thaliana]7654e-079
XP_002888727 hypothetical protein ARALYDRAFT_476099 [Arabidopsis lyrata subsp. lyrata]7564e-078

Swiss-Prot top hits (Blast detail)Scoree value
O94298 Uncharacterized hydroxylase C887.15c2893e-025
P38992 Sphingolipid C4-hydroxylase SUR22543e-021
Q15800 C-4 methylsterol oxidase1532e-009
Q5R574 C-4 methylsterol oxidase1532e-009
Q4R4Q4 C-4 methylsterol oxidase1522e-009

TrEMBL top hits (Blast detail)Scoree value
Q9AST3 At1g14290/F14L17_48754e-092
Q9M9T3 F14L17.5 protein8702e-091
Q8VYI1 At1g69640/F24J1.227652e-079
Q9FWZ2 Acid phosphatase, putative; 5376-69037554e-078
B9S8V4 Sur2 hydroxylase/desaturase, putative7383e-076

Arabidopsis top hits (Blast detail)Scoree value
AT1G14290.1 SBH2 (SPHINGOID BASE HYDROXYLASE 2); catalytic/ sphingosine hydroxylase8807e-095
AT1G69640.1 SBH1 (SPHINGOID BASE HYDROXYLASE 1); catalytic/ sphingosine hydroxylase7704e-082

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  100%

Unigene Members