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Information for unigene UN54800
| FASTA Sequence |
| Unigene ID: UN54800 | Length: 845 |
SSR | | GGAAACTTTTCAACACACCAGATCTTTTTTGTTACTTATTTGCTCACCAAAACTTGTCTACTTAACAAGCCTCCCAAATCTCAACA
ATTTCATTCACAAATCCATCCGTAATATCGAGAGATCATCCTAGAAAAACCATAAAATCACTTATTTAAAAGAAAGAAGAAAAAAG
AAGATGGATAATAACAATAACCAGCAAACGTTTTGGCAGTTCAGCGATCAATTGAGAGTCCTCCAGGCGCCCCACAATCTTTCCTT
AAACGACTCCATCTGGAGCACCACCAACAAACGCACCGACGACCGCAGAAACTTCGACATCGCAGCCGCCTCCACCAACAAAACCC
TATCGAATATCACAACAACAACAAGGCTTCTTCCGACAACAACAACAACAACAACAACAACGCTGCGAGCTGGAACACCTGGAAGT
CTATCTCCAACGGTTTCGGACCCATCGGCTCAAAATCAACAACATCCACAAACGTCAATTTCAACCACACCGACGACAACCCCTGG
AAACTCAACAACTCGGACGTGAACAACGGCGATTTCAACAAGGGCATCTACTCCTCCCAGCCCAAGAGCTATGGCTTCAATTTCAA
GAACAACAAGGGGATGATCATCGATCAAGATCATCATCAGATCTCCCAGAAAGGAGTAGGGAAGAAGAACAGGAAGAATCAGAAGA
ATAACAACAACAACAAAGGAAGATGACAAGATCACCAACGAGAAGAGGTTTAAGACTCTTCCTCCCGCGGAGGCACTTCCGAGGAA
CGAGACCATCGGTGGTTACATCTTTGTCTGCAACAACGACACCATGGGAGGAGAATCTGAAGCGCCAGCTA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| ACU17761 unknown [Glycine max] | 173 | 2e-010 |
| BAB08438 unnamed protein product [Arabidopsis thaliana] | 172 | 2e-010 |
| NP_568600 DCD (Development and Cell Death) domain protein [Arabidopsis thaliana] | 172 | 2e-010 |
| XP_002870594 hypothetical protein ARALYDRAFT_493778 [Arabidopsis lyrata subsp. lyrata] | 172 | 2e-010 |
| XP_002518847 n-rich protein, putative [Ricinus communis] | 167 | 8e-010 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P37707 B2 protein | 164 | 8e-011 |
| Q6XHA7 Probable serine/threonine-protein kinase roco9 | 156 | 7e-010 |
| Q1ZXA9 Uncharacterized protein DDB_G0292186 | 156 | 7e-010 |
| Q54UW4 Bromodomain-containing protein DDB_G0280777 | 155 | 9e-010 |
| Q54SZ6 Putative uncharacterized protein DDB_G0282133 | 153 | 2e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| C6T7F9 Putative uncharacterized protein | 173 | 1e-010 |
| Q8RXN8 Putative uncharacterized protein | 172 | 1e-010 |
| Q9FHX9 Genomic DNA, chromosome 5, P1 clone:MJC20 | 172 | 1e-010 |
| B9RYM8 N-rich protein, putative | 167 | 5e-010 |
| Q55FD4 Putative uncharacterized protein | 166 | 7e-010 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G42050.1 FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27090.1); Has 5084 Blast hits to 2870 proteins in 85 species: Archae - 0; Bacteria - 24; Metazoa - 270; Fungi - 58; Plants - 157; Viruses - 8; Other Eukaryotes - 4567 (source: NCBI BLink). | 172 | 9e-013 |
| AT3G27090.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Development and cell death domain (InterPro:IPR013989), Kelch related (InterPro:IPR013089); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G42050.1); Has 642 Blast hits to 564 proteins in 35 species: Archae - 0; Bacteria - 2; Metazoa - 12; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 473 (source: NCBI BLink). | 143 | 2e-009 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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