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Information for unigene UN54960

FASTA Sequence
Unigene ID: UN54960Length: 814 SSR 
GGCTCTTTGACGATTTCGAAAACAAAGCTCTCCTGCTGAACTCTCTCTCTCTCTCTCTCTCTCTCTCCATCTTCTTTAGTTTTCCA
CAAGAACTCATTCACCGATTTTTATGAGAGATCCGACAAAACCCTGATGCCTGATCCCGTGAAAACGGCGGTGGATCCGCTTCTGA
GAGATTTAGATGGGAAGAAAGAGAGTTTCCGGCGCAACGTGGTGTCTATGGCGGCTGAGCTTAAGCAAGTGAAAGGCCGTTTGATT
TCTAAAGAACAATTCTTTGCTAAAGAAAGCCTTTCTAGAAAAGAAGCAGAGACAAAAGCTAAGAACATGGAAAGGGAGATCTGTAA
ATTGCAGAAGACATTGGAAGATAGGAATTGTCAGCTTGAAGCTTCAACATCTGCTGCTACAAAGTTTCTGGAAGAAGTAGACGACC
TGAGATCGCAGCTAGCTTTAACAAAGGAACTGGCAGAAACAAGCGCTGCTTCTGCTCAATCCGCACAGCTCCAATGCACAATGCTC
GCAGAACAACTCGACGATAAAACACGTTTGCTAAGAGAGCACGAAGACCGTGTGACTCAGCTAGGCCACCAGCTTGATAATCTTCA
GCGAGATCTAAAAACGAGAGAGTGTTCTCAGAAGCAGCTGAGGGACGAGGTCACGAGAATCGAGCGTGAGATTGCAAAGTCAGGGA
AAGACACGGAATGTGAGCTAAAGAGACTTGTGGAAGAGTTTCTCCAAAGAACTTGGAGAGAGTGAACACGCTGTTGGGTGCAGAGA
CGAAGAGATTGCAAACTCAAGATGAGATAAGTTAATGACA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002874325 hypothetical protein ARALYDRAFT_326902 [Arabidopsis lyrata subsp. lyrata]8353e-087
NP_568487 uncharacterized protein [Arabidopsis thaliana]8326e-087
AAB61054 contains similarity to myosin heavy chain [Arabidopsis thaliana]8326e-087
NP_001031946 uncharacterized protein [Arabidopsis thaliana]8326e-087
AAD09217 plant IF-like protein [Arabidopsis thaliana]6507e-066

Swiss-Prot top hits (Blast detail)Scoree value
Q03410 Synaptonemal complex protein 11352e-007
Q62209 Synaptonemal complex protein 11307e-007
Q60563 Synaptonemal complex protein 1 (Fragment)1253e-006
Q9LW85 MAR-binding filament-like protein 11234e-006

TrEMBL top hits (Blast detail)Scoree value
O04626 F2P16.20 protein8324e-087
Q5PP55 At5g267708324e-087
Q9M9L3 F10A16.12 protein6505e-066
Q9ZRC5 Plant IF-like protein6505e-066
Q56Y98 Putative uncharacterized protein At3g05830 (Fragment)6399e-065

Arabidopsis top hits (Blast detail)Scoree value
AT5G26770.2 unknown protein8322e-089
AT5G26770.1 unknown protein8322e-089
AT5G26770.3 unknown protein8322e-089
AT3G05830.1 Encodes alpha-helical IF (intermediate filament)-like protein.6503e-068
AT1G09470.1 unknown protein4514e-045

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  100%

Unigene Members