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Information for unigene UN55126
| FASTA Sequence |
| Unigene ID: UN55126 | Length: 776 |
SSR | | GGCTAACCTTTTCATTGACAACCTTGACCCTGATGTTGATGAAAAGATCTTGTATGATACTTTCAGCGCTTTTGGTGGCATTGCTT
CTAATCCCAAGATAATGCGAGATCCTGATACTGGCAACTCACGAGGTTTCGGTTTCATCAGCTATGACTCCTTTGACGCTTCTGAT
GCTGCTATTGAGGCAATGACCGGACAATATCTATGTAATCGTCAAATCACAGTCTCTTACGCATACAAGAAATACACCAAAGGAGA
GCGCCATGGTACTCCTGCAGAGAGGCTTTTGGCTGCCACAAATCCAGTTACCCAGAAGAGCAGACCCCATACTCTATTCGCAAGCG
GCCCGCCAACACATCCCAATGCTCCTCAAGCTAATGGTATTCCACGTCCCTTTGTCAATGGCGGCATGCCACCTGTTTCCATCCCA
GGCCCCCGTCCAACACCACCACCACCACCCCCACAAGTCTACCAAACTCAGCCACCACCATCTTGGCAACCTCAGCCGCATCAACA
ACAACACGGCTTAGCGGTTCCACCCCCATGCAGTTCCGTCCTACCCAGGGAATGCCGCCGCCACCACCTCCACAGTTTCTTCATCA
GCAACAAGGTTTCGGCGGTCCAAGGCCACCACCACCACCACCTCAAGCCATGGGAATGCACCGACATGGATGGCCGCCGCACACAT
GCAGCAAGTGGGCCACCACCGCCCCACACATGCAGCAAGTGGTCCACACCGCACAACACATGCAGCACCATCATCACATGTCTATG
CA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002886178 hypothetical protein ARALYDRAFT_480759 [Arabidopsis lyrata subsp. lyrata] | 760 | 1e-078 |
| AAK59656 putative spliceosome associated protein [Arabidopsis thaliana] | 759 | 2e-078 |
| NP_179441 splicing factor 3B subunit 4 [Arabidopsis thaliana] | 759 | 2e-078 |
| AAM65408 putative spliceosome associated protein [Arabidopsis thaliana] | 758 | 2e-078 |
| XP_002883837 predicted protein [Arabidopsis lyrata subsp. lyrata] | 756 | 3e-078 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q15427 Splicing factor 3B subunit 4 | 536 | 5e-054 |
| Q8QZY9 Splicing factor 3B subunit 4 | 534 | 9e-054 |
| Q6AYL5 Splicing factor 3B subunit 4 | 534 | 9e-054 |
| Q09442 Splicing factor 3B subunit 4 | 441 | 5e-043 |
| O14102 Spliceosome-associated protein 49 | 333 | 2e-030 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q94C63 Putative spliceosome associated protein | 759 | 1e-078 |
| Q9ZU66 Putative spliceosome associated protein | 759 | 1e-078 |
| Q8LAF1 Putative spliceosome associated protein | 758 | 1e-078 |
| B9RRM5 Spliceosome associated protein, putative | 683 | 7e-070 |
| B8BH92 Putative uncharacterized protein | 615 | 5e-062 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G18510.1 emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding | 759 | 7e-081 |
| AT1G54080.1 oligouridylate-binding protein, putative | 184 | 3e-014 |
| AT1G54080.2 oligouridylate-binding protein, putative | 174 | 4e-013 |
| AT3G14100.1 oligouridylate-binding protein, putative | 169 | 2e-012 |
| AT1G17370.1 UBP1B (oligouridylate binding protein 1B); mRNA 3'-UTR binding | 167 | 3e-012 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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