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Information for unigene UN55159
| FASTA Sequence |
| Unigene ID: UN55159 | Length: 734 |
SSR | | ATCCGGTCCAATCCGCCGCAACAACCCTAATCGGAAATCAAACCGATCTGCTCCATACCAATCGTCGGCCAAGGCGCCGGAGTCCA
CCTGGGAACACGACATGTACTCCTCCGAAGGCTTCCCTTCCCGATCAACCCGTTCTTCCGCCGGAATCGAAACCGGAACGAAGCTC
TACATATCCAACTTGGACTACGGTGTCATGAACGACGACATCAAGGAACTGTTTGCTGAAGTAGGGGAGCTTAAACGTTACACTGT
TCACTTTGACAGGAGTGGAAGATCAAAGGGAACTGCTGAAGTTGTATACTCTCGGCGTGGTGATGCAATCGCTGCTGTGAAGAAGT
ACAACGACGTTCAGCTCGACGGAAAGCCCATGAAGATTGAGATTGTGGGAAACAATCTTCAAGCCGCTTCTGCTCCGTCTGGTAGA
CACGGGAGTGCAAACTTCGGTGGTGCTTCTTCAAGGCGTGGAGGACATGGGAGAGGTGGTCAACAACGTCGTGGTGGTGGTGGTGG
TCAAGGAGGCCGTGGTGGTGGTCGTGGCAGACGCTCTGGCAAGGGCCCAACAGAGAAGGTATCTGCTGAAGATCTTGATGCGGATC
TTGATAAGTACCACGCAGAGATATGGAGACAAACTGAGGAATGTGGCTCATATCTTCTCGAACTACCTCAAGTGTGTGAGCTAAGA
AGAGGAGAAGCTAGAAACTCTGGCCAGAGCTTTGCTATTAAGCTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_001190572 RNA recognition motif-containing protein [Arabidopsis thaliana] | 859 | 3e-090 |
| NP_851229 RNA recognition motif-containing protein [Arabidopsis thaliana] | 848 | 7e-089 |
| NP_974965 RNA recognition motif-containing protein [Arabidopsis thaliana] | 837 | 1e-087 |
| BAB08363 RNA and export factor binding protein 2-I-like protein [Arabidopsis thaliana] | 833 | 4e-087 |
| XP_002864660 hypothetical protein ARALYDRAFT_496130 [Arabidopsis lyrata subsp. lyrata] | 833 | 4e-087 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q86V81 THO complex subunit 4 | 432 | 5e-042 |
| Q3T0I4 THO complex subunit 4 | 428 | 2e-041 |
| B5FXN8 THO complex subunit 4 | 426 | 3e-041 |
| Q28FB9 THO complex subunit 4 | 426 | 3e-041 |
| O08583 THO complex subunit 4 | 416 | 4e-040 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L773 Transcriptional coactivator-like protein | 848 | 5e-089 |
| Q3E888 Putative uncharacterized protein At5g59950.3 | 837 | 9e-088 |
| Q9FJE1 RNA and export factor binding protein 2-I-like protein | 833 | 2e-087 |
| Q8LCA6 Transcriptional coactivator-like protein | 828 | 9e-087 |
| Q3E889 Putative uncharacterized protein At5g59950.2 | 706 | 1e-072 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G59950.1 RNA and export factor-binding protein, putative | 848 | 3e-091 |
| AT5G59950.3 RNA and export factor-binding protein, putative | 837 | 5e-090 |
| AT5G59950.2 RNA and export factor-binding protein, putative | 706 | 8e-075 |
| AT5G59950.4 RNA and export factor-binding protein, putative | 645 | 1e-067 |
| AT5G02530.1 RNA and export factor-binding protein, putative | 392 | 2e-038 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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