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Information for unigene UN55173
| FASTA Sequence |
| Unigene ID: UN55173 | Length: 748 |
SSR | | CTCCTCTTAAACCCTTCCAACAAACTCATAGCCATGATAGGAGCTTCGAGAACAATCCTCTCCCTCTCCCTCTCTTCCTCCCTCTT
CACCTTCTCCAGAACCACCCCTCACGTCATCCCACTTCTCCGCTCCACAAACCATTCCACCGCAGCAGAGGCCGAGCAGCGTTGTT
GTCGGCATAGAGGAAGAGCAAAAGAGTAGTAATAAGAAGAAGAAGAAGATGGTAGAGAGTTTCGAGGAGCTAGGGCTAAGCGAGGA
AGTGATGGGAGCTTTGAAAGAGATGAACATTGAGGTTCCTACTGAGATTCAGTGTATCGGAGTACCTGCTGTTATGGAACGCAAGA
GCGTCGTCTTGGGCTCTCACACTGGCTCCGGCAAGACTCTTGCCTACTTGCTTCCTATTGTTCAGCTGATGAGAGAAGATGAGGCA
ACCCTTGGTAAGATAACAAAGCCTAGGCGTCCCAGGACTGTTGTTCTCTGTCCCACCAGAGAACTCTCTGAGCAGGTTTACCGTGT
GGCAAAGTCGGTAAGCCACCACGCGAGGTTCAGATCAATATTGGTTAGCGGTGGTTCTCGGATAAGACCACAGGAGGATTCTTTGA
ACAATGCAATAGACATGGTTGTTGGAACCCCTGGTAGGATTCTTCAGCATATCGAAGACGAAACATGGTCTATGGAGATATTGCGT
ATTTGGTGCTTGATGAGCAGACACTATGTTTGATCGTGGCTTCGTCTGACATCCGCAGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002872459 hypothetical protein ARALYDRAFT_911240 [Arabidopsis lyrata subsp. lyrata] | 786 | 1e-081 |
| NP_849348 DEAD-box ATP-dependent RNA helicase 39 [Arabidopsis thaliana] | 776 | 2e-080 |
| BAD43116 unnamed protein product [Arabidopsis thaliana] | 772 | 4e-080 |
| CAB39640 putative protein [Arabidopsis thaliana] | 704 | 3e-072 |
| XP_002307523 predicted protein [Populus trichocarpa] | 656 | 1e-066 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q56X76 DEAD-box ATP-dependent RNA helicase 39 | 776 | 7e-082 |
| Q5VRY0 DEAD-box ATP-dependent RNA helicase 39 | 610 | 1e-062 |
| Q0DVX2 DEAD-box ATP-dependent RNA helicase 50 | 301 | 9e-027 |
| Q8GUG7 DEAD-box ATP-dependent RNA helicase 50 | 292 | 9e-026 |
| A4R8B5 ATP-dependent RNA helicase HAS1 | 258 | 8e-022 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9H7X6 Predicted protein | 656 | 9e-067 |
| B9SM71 Dead box ATP-dependent RNA helicase, putative | 651 | 3e-066 |
| C5XML6 Putative uncharacterized protein Sb03g003520 | 622 | 8e-063 |
| B4F930 Putative uncharacterized protein | 616 | 4e-062 |
| B8ADM4 Putative uncharacterized protein | 610 | 2e-061 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT4G09730.1 DEAD/DEAH box helicase, putative | 776 | 7e-083 |
| AT3G06980.1 DEAD/DEAH box helicase, putative | 292 | 9e-027 |
| AT5G65900.1 DEAD/DEAH box helicase, putative | 243 | 4e-021 |
| AT1G12770.1 EMB1586 (embryo defective 1586); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding | 239 | 1e-020 |
| AT3G18600.1 DEAD/DEAH box helicase, putative | 233 | 6e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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