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Information for unigene UN55193
| FASTA Sequence |
| Unigene ID: UN55193 | Length: 758 |
SSR | | GAAGCTGGAGCAAGTCCGTAACCACCTTCAGGTTTGACCTTTGTACTAACAAATCTGGATAGGAATCTTCTTGCTTGATTTTTTAA
AAACAGAATGTTGCCTTGTCTTTACGCTAGTTGAATTGATATCCATTGTGCTACTACTGTTTTCAGCTTGCTCGGTTTCAATCAGA
CCGAACTGGTGATCTCTGCAAACAGCTTATAAACCATGGCAGTAGTTCACACCCTCCTGCTACAGAAGAAGAGTCGAAAGAAGTCG
TCAAAGTTTCATTCACTGCATCTGCACCGGTTATGTTTGCCTCGAACCCACCAACTCAGTCAGTGGTAGTAGACCCAAGAAAAACT
GAAGCTGCAGCAATGGTAGCTAAGCTAACTGCTTCAACCTCCTCAGCCGAGATGCTCTCCTACGTTCTCTCCTCCTTTGCCTCCGA
AGGAATCATCGGAAACAACCCACCTACTGTAACAGAAACACCACCATCCGACGCTTACCCGCCAGAGAAACGGCCCAAGCTTCAAA
ACCTTGACCAGTCCTATCTCCAACAGAACACATCCTCAGCCACCACCAGTCCTCCACCACCACCACCAGCATTCCAGCTTCAGCCT
CAGTTCTTGCAGCCGTTACAGCCTCCTGGTCCTGTAAACTCCACACCATTCAGCTACAGCATAGCAACCACTCAACAACAACAACA
ACAACAAGGTCCTTGGATCCTGGGCTCACCTCGCTTCAACACCTCTGCTCATCAGATATCATACCAAAGT
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| GenBank top hits (Blast detail) | Score | e value |
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| BAB01080 unnamed protein product [Arabidopsis thaliana] | 687 | 3e-070 |
| NP_189335 ENTH/VHS family protein [Arabidopsis thaliana] | 687 | 3e-070 |
| XP_002875349 hypothetical protein ARALYDRAFT_484483 [Arabidopsis lyrata subsp. lyrata] | 654 | 2e-066 |
| CBI21316 unnamed protein product [Vitis vinifera] | 250 | 2e-019 |
| ADN33681 hypothetical protein [Cucumis melo subsp. melo] | 226 | 9e-017 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
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| Q66GK1 At3g26990 | 687 | 2e-070 |
| Q9LSD7 Genomic DNA, chromosome 3, P1 clone: MOJ10 | 687 | 2e-070 |
| B9RH35 Putative uncharacterized protein | 215 | 1e-015 |
| B9GF66 Predicted protein (Fragment) | 210 | 5e-015 |
| A9PBH2 Putative uncharacterized protein | 208 | 8e-015 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G26990.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF618 (InterPro:IPR006903), Regulation of nuclear pre-mRNA protein (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G10060.1); Has 815 Blast hits to 806 proteins in 138 species: Archae - 0; Bacteria - 10; Metazoa - 490; Fungi - 159; Plants - 81; Viruses - 1; Other Eukaryotes - 74 (source: NCBI BLink). | 687 | 1e-072 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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