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Information for unigene UN55240

FASTA Sequence
Unigene ID: UN55240Length: 780 SSR 
GGCTCACTATTTTCTTCTGAACAGTGGTGGTGAGTGCAGACCACCATCAGATTTAGGAATCTCTCTGTTATACACAGATTCTGAAT
CTCTTCTCCACCGTCGAAGTTTTGAATTATCTCTCTCTCTCCCCCCTTCTCCCTTGAGCTTCCGTAGCTTCGATCCTCTCGCATTT
TACGTTTTACGTTATGCAGCACGAATAAGATAATCGTAGATCGTGATTGAAAGCGAGAGAGAGAGCAAAAAAAAAAAAGAATTAGG
AGAGGGGAAGATGAGCGAGGGGCAGAAGTTCCAGCTGGGAACAATCGGCGCTTTGAGTTTATCCGTTGTGTCGTCTGTGTCGATCG
TGATCTGCAACAAGGCCCTTATAGCACCCTTGGCTTCACCTTCGCGACTACTTTGACAAGTTGGCATCTTTTGGTCACGTTTTGTT
CCCTTCATGTGGCACTATGGATGAAGATGTTTGAACACAAGCCTTTTGATCCACGAGCCGTGATGGGATTTGGTATATTGAATGGG
ATCTCTATTGGACTATTGAACCTCAGCCTGGGCTTTAATTCCGTTGGTTTTACCAGATGACAAAACTAGCAATCATCCCCTGTACT
GTTCTCTTGGAAACCCTCTTCTTCAGGAAAAAGTTCAGTCGAAAAATTCAGTTTTCGTTAACCATCCTTCTCCTTGGTGTTGGGAT
TGCAACCGTCACAGATCTTCAGCTTAATATGCTGGGTTCTGTCTGTCTCTGCTGGCTGTATCACAACTTGTGTTGCTCAATTATGA
CAATAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_172172 nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]3631e-032
XP_002892363 hypothetical protein ARALYDRAFT_470711 [Arabidopsis lyrata subsp. lyrata]3631e-032
NP_001184926 nodulin MtN21 /EamA-like transporter protein [Arabidopsis thaliana]3631e-032
XP_002518283 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]3585e-032
NP_001154542 Nucleotide/sugar transporter family protein [Arabidopsis thaliana]3541e-031

Swiss-Prot top hits (Blast detail)Scoree value
Q8RXL8 Uncharacterized membrane protein At1g068903636e-034

TrEMBL top hits (Blast detail)Scoree value
B9RX14 UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative3583e-032
Q8GUJ1 At2g304603541e-031
C0PTR1 Putative uncharacterized protein3468e-031
A5C3I8 Putative uncharacterized protein3432e-030
A9PAL1 Putative uncharacterized protein3422e-030

Arabidopsis top hits (Blast detail)Scoree value
AT1G06890.1 transporter-related3635e-035
AT1G06890.2 transporter-related3635e-035
AT2G30460.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 782 Blast hits to 581 proteins in 90 species: Archae - 0; Bacteria - 6; Metazoa - 140; Fungi - 34; Plants - 501; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).3546e-034
AT2G30460.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2).3546e-034
AT2G28315.1 LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 1852 Blast hits to 1847 proteins in 207 species: Archae - 0; Bacteria - 58; Metazoa - 582; Fungi - 250; Plants - 685; Viruses - 0; Other Eukaryotes - 277 (source: NCBI BLink).2686e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  100%

Unigene Members