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Information for unigene UN55713
| FASTA Sequence |
| Unigene ID: UN55713 | Length: 844 |
SSR | | GGGAGTGAGTGAGTGTGAGGACTCGAATTACGCCTCCCATCAATCGAAACACACAGAGAGAGAGAGGCCATGTTTTGAGTTTTGTC
TCTCCTCCTCTGGGGCGAATCTGAGAATGTTATTAAGACCGAAGATGATGATAAGCTCCTGGCTTGGCAAAGATGCGAAGAAGATT
CTCAAACGCAAAGACAGCGACGCCGGCGAAAAAGGGAAAGCACTGGAGGAGTTGCGAGCATCGTTGTTCAACAGATTCCGTTCGCC
GGAGACTCCAAAGAGACAGCAGCAGCAACAGCAACAGTCGCAGCACCGTATCTGTGGTCCAACTCTTGCTCTCACTTTCAACTTCT
TCGTTGCTATTAGCATTATCTTCATGAACAAATGGGTGCTTAAAAACATAGGGTTTGAGTTCCCAGTGTTCCTCACATTCATCCAC
TACATTGTGGCTTATCTACTAATGGCTCTTCTCAAATCATTCTCCCTTCTCCCCGCTCCTCCACCTCCTTCCTCCACCAAGTCATC
CTCTCTTTCCCTCTACACTCTCGGCATTGTTATGTCACTCTCTACTGGTCTCGCTAATGTCAGCCTCAAGTACAACAGTGTTGGAT
TCTACCAGATGGCGAAAATCGCCGTCACGCCGTCGATTGTGTTTGCAGAGTTCTTGTGGTATAGAAAGAGAGTTTCTTTCATGAAA
GTGGTTGCACTTACAGTTGTATCTGTAGGAGTTGCGGTTGCGACTGTAACAGATTTACAGTTCAGTCTGTTTGGTGCTTGTGTGGC
TTTAGCATGGATCATACCTAGCGCTACCAACAAATCTTATGGCCAACATGCACACGAGAGACTGGACGCG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002866182 At5g57100 [Arabidopsis lyrata subsp. lyrata] | 1027 | 1e-109 |
| NP_200520 Nucleotide/sugar transporter family protein [Arabidopsis thaliana] | 1014 | 5e-108 |
| AAO24585 At5g57100 [Arabidopsis thaliana] | 1010 | 1e-107 |
| AAM62761 unknown [Arabidopsis thaliana] | 988 | 5e-105 |
| XP_002527697 organic anion transporter, putative [Ricinus communis] | 676 | 8e-069 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8RXL8 Uncharacterized membrane protein At1g06890 | 236 | 4e-019 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LU76 Gb|AAF04433.1 | 1014 | 3e-108 |
| Q84WJ4 At5g57100 | 1010 | 1e-107 |
| Q8LEA4 Putative uncharacterized protein | 1001 | 1e-106 |
| B9SNX8 Organic anion transporter, putative | 676 | 5e-069 |
| C6TFJ0 Putative uncharacterized protein | 636 | 2e-064 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G57100.1 transporter-related | 1021 | 3e-111 |
| AT5G55950.1 transporter-related | 689 | 1e-072 |
| AT1G06890.1 transporter-related | 236 | 3e-020 |
| AT1G06890.2 transporter-related | 236 | 3e-020 |
| AT2G30460.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: transporter-related (TAIR:AT1G06890.2); Has 782 Blast hits to 581 proteins in 90 species: Archae - 0; Bacteria - 6; Metazoa - 140; Fungi - 34; Plants - 501; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). | 223 | 1e-018 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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