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Information for unigene UN56002

FASTA Sequence
Unigene ID: UN56002Length: 789 SSR 
GGAATTTTGGTTGTTGTATGAGTGTGCGCTGCAAGGTGGTGCAAGACGAAGGGAGGGCAGAACGGTCTTTTCAGTAGTGCCTTGCC
GAGGAATTTCCGGAGATCATCGGAGGTGGTGGTGGTGGTGGAGGAGCCGAAGCCTGTTGTTGTGTTGACGGATGAGAAAGGGACGA
AACCGAGGAAGCATAAGAAGATGGTTCGGTCTAAGAAGGAGAAACAGAGTTCGGTTCCTCTGTTGCCTTCTCCTCCTTGTCTATCT
TCAGATCTAAGTGAAGATGTTTGTCAAGGTGATTTGGAGCGGATTAGAGAGAATATTAACGATCTAATCATGTGGAGAGATGTTGC
AAAGTCGACACTTAGGTTCGGTTTCGGGTGTTTGTATTTCATGTCTTCTTGCTTTGCTAAAGGATTCAGCTTTAGTGTTTTCTCAG
CGGTCTCTCATGTTGGGCTTTTGTTTCTCGGGGTTTCGTTTTTGTCACTCTCTTCGCCAAAGGGTAACAGAAGAGACAGAGCGGAG
ATAGGTTAAACTGAGTGAAGAGGATGTGTTACGAGTAGCTAGAAGAATGCTTCCAGTCACCAATTTTGGCGATTTCAGAGACGAGC
CAGCTTTTCTCTGGCGAACCAGCAATGACACTCAAAGTGGCACCGCCTTGCATCATGTCTTTACAGTTCTGCATTCTGCATCATGT
CTTTACAGTTCTGCATTCTGCATCATGTCTTCACAATTCTGCATCATGTCTTTACAATTCTGTATTCTGCATATGTCTTTACATTC
TGCATTCTGCATGTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002869503 hypothetical protein ARALYDRAFT_491927 [Arabidopsis lyrata subsp. lyrata]5073e-049
NP_567809 reticulon-like protein B18 [Arabidopsis thaliana]5021e-048
BAE99357 hypothetical protein [Arabidopsis thaliana]5021e-048
AAM63049 unknown [Arabidopsis thaliana]4965e-048
CAA16882 hypothetical protein [Arabidopsis thaliana]4302e-040

Swiss-Prot top hits (Blast detail)Scoree value
Q8LDS3 Reticulon-like protein B185025e-050
Q6DR04 Reticulon-like protein B173493e-032
Q56X72 Reticulon-like protein B211494e-009

TrEMBL top hits (Blast detail)Scoree value
B9RVU8 Putative uncharacterized protein3209e-028
B9HGQ3 Predicted protein2912e-024
B4F847 Putative uncharacterized protein1612e-009
B9G026 Putative uncharacterized protein1612e-009
B8AFY3 Putative uncharacterized protein1585e-009

Arabidopsis top hits (Blast detail)Scoree value
AT4G28430.1 reticulon family protein5024e-051
AT2G20590.1 reticulon family protein3492e-033
AT2G20590.2 reticulon family protein3492e-033
AT5G58000.1 LOCATED IN: endoplasmic reticulum, chloroplast; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: reticulon family protein (TAIR:AT4G28430.1); Has 1047 Blast hits to 1034 proteins in 125 species: Archae - 0; Bacteria - 2; Metazoa - 715; Fungi - 46; Plants - 58; Viruses - 4; Other Eukaryotes - 222 (source: NCBI BLink).1494e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  100%

Unigene Members