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Information for unigene UN56037

FASTA Sequence
Unigene ID: UN56037Length: 668 SSR 
GGCTACTGCACCAGAGAGAGAGAGAGGGAGGCAGAGCCTTAACGGCGAATATGGAAGGGGACTTAGAGGTTGCGCTGGGGAGATTC
TCCGTCTCGGATTTACAGTTCCACGTGGTGTCTCTGGCCGTAATCCGATCCTCCGGCGAGCTATGGTGATAAAGATGAGAGACCGG
AGCAAGAACAGGAAACCACTCCAGAGAGGTCGGATGCTCAGCATCGAAGCGATTCAAGCCGTTCAAGCCCTGAAGCGAGCCAACAC
TCCTCCGTCTCCTTCCTCCTCCTCATCGATGCTCGATCGCGTAATCGATTCCAAAATCCGCCGGCTCTTGAAATTTGATATGGTCG
CCGTTCTCCGGGAACTGTTACGCCAGAACGAGTGCTCTCTAGCTCTCAAAGTTTTTGAAGAGATTCGGAAGGAGTATTGGTACAAG
CCTCACGTGAGACTATACGCAGACATGATCGCTGTTATGGCGGGTAACAGCTTGCTAGAGGAGGTCAACCGTCTTTACGCAGCTAT
GAAATCAGAGAAGGGATTAACGGCTGAGATCGAGAGCTTCGACACACTCTTGGTGATTCTTCTGAATCACAAGCTGTTTGAACTTG
TCATGGACTGCTACGGCTTTATGCAATCGATAGGGTACGAGCCTGATAGTATTCCTTTAGATCCTA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873394 hypothetical protein ARALYDRAFT_487743 [Arabidopsis lyrata subsp. lyrata]8128e-085
AAM67277 unknown [Arabidopsis thaliana]7912e-082
NP_196494 Vacuolar sorting protein 9 (VPS9) domain protein [Arabidopsis thaliana]7894e-082
AAM97056 putative protein [Arabidopsis thaliana]7894e-082
XP_002279994 PREDICTED: hypothetical protein [Vitis vinifera]4623e-044

Swiss-Prot top hits (Blast detail)Scoree value
Q1PFH7 Pentatricopeptide repeat-containing protein At1g623502067e-016
Q9STF9 Pentatricopeptide repeat-containing protein At3g468701986e-015

TrEMBL top hits (Blast detail)Scoree value
Q8LGB7 Putative uncharacterized protein7912e-082
Q8L797 At5g093207893e-082
Q9FY83 Putative uncharacterized protein T5E8_1207893e-082
B9HPM5 Predicted protein4156e-039
Q7XKU6 OSJNBa0022H21.11 protein4112e-038

Arabidopsis top hits (Blast detail)Scoree value
AT5G09320.1 VPS9B7892e-084
AT1G62350.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: shoot apex; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT3G46870.1); Has 136 Blast hits to 136 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2067e-017
AT3G46870.1 pentatricopeptide (PPR) repeat-containing protein1986e-016
AT3G27750.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: VPS9B (TAIR:AT5G09320.1); Has 54 Blast hits to 54 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 54; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1942e-015

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  100%

Unigene Members