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Information for unigene UN56175

FASTA Sequence
Unigene ID: UN56175Length: 781 SSR 
GTTTAATCAGTAATCAACTCCCTTGGAAACAACTTCTTTGCAAGTAGGTTCGAGTAAAATGGTGTGTTCAAACTGTGACACATAAA
GACTTCGTGCACTATAAAGACTAAACTAAAAGATTAACAAGAGGACTTGGATAGACGTAAGAAACGAAATCGGTCTTGCAGTTGGA
GGATGCAGCTCCAACGAGCGTCATGGGTTTGCAATATATGACCATCATCAACCAAAACGCCCCCAAGAATACTCATCAAATGTTCC
AACTCTCTAGCCGTTCCTCCAAAGGCAAGAAGATGCAACACCTTCACTTTGACGAGATGCATGGTACCATCGCATGTGTACTCATC
CAGACCGTGGATGAGTAGAGTACAGAGATTTGGAGACTGCTTGATAAGGCAAGGCAGCAGTTTCCAGCATCGTTTGTTGTCACCCC
AAAAAAATAAGTTAATCAGATTCTTGAACATCGGTAGAGATAGTCCGTGTTTAACACATCGAGAAATCACCTGAAACATCATCACA
CACACACACATATATGCTTCAATAATGAGAGTGTCTTTTTTTTTATGAGTTACATTAAGTAAAAACTTACATTAGTAGAAGCAGGA
GTAAGATGCAGGGTGTGGACGTTGCTTATCCCATTAATGAGACCAGACATATCAGGCCTCTTGATTAATTTAGAATAATGAATATT
CAGCCAAGCTTGAACTAGGGACTCTAAGTCCACTTGTGGGTACTCTTCCAATGCATAATCTGAGTAGTTGAGGGAGACAAGATTCG
GTGCGTG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002878313 hypothetical protein ARALYDRAFT_324460 [Arabidopsis lyrata subsp. lyrata]2412e-018
NP_191505 uncharacterized protein [Arabidopsis thaliana]2188e-016
XP_002878280 predicted protein [Arabidopsis lyrata subsp. lyrata]1945e-013
Q8GWI2 RecName: Full=F-box/LRR-repeat protein At3g600401937e-013
NP_191563 F-box/LRR-repeat protein [Arabidopsis thaliana]1937e-013

Swiss-Prot top hits (Blast detail)Scoree value
Q8GWI2 F-box/LRR-repeat protein At3g600401933e-014
P0C2G0 F-box/LRR-repeat protein At1g066301872e-013
Q6DR13 F-box/LRR-repeat protein At2g427201315e-007
Q9M190 Putative F-box/LRR-repeat protein At3g427701281e-006

TrEMBL top hits (Blast detail)Scoree value
Q9M1C1 Putative uncharacterized protein T16L24.102186e-016
Q9LXP5 Putative uncharacterized protein F26G5_1301577e-009

Arabidopsis top hits (Blast detail)Scoree value
AT3G59460.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: flower, pollen tube; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 152 Blast hits to 150 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2184e-018
AT3G60040.1 F-box family protein1933e-015
AT1G06630.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1).1871e-014
AT1G06630.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1); Has 1188 Blast hits to 1155 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1187; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).1692e-012
AT1G06630.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G60040.1).1692e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
111  100%

Unigene Members