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Information for unigene UN56281
| FASTA Sequence |
| Unigene ID: UN56281 | Length: 458 |
SSR | | GGATTAAAGTTGTAATATATTCTAAGAAAAAAAAAAAATCTCTAACACAAGAAAAAAAAGAAAAAGTAGCATTGACAGAATACAAG
GGAGATAATAATAGTAGCACCCCACCAAAATCCAAAATGGAGGGGGTTTATTTCTTAACATAGGTGATGTGCATAGGGGTCTGGTG
AATGGTGAAACCTTCAAGACCGTGCATAGCAGCGGTAGACTGCATCTCATAAGCAAACTCAACGAAAGCAATACCTGGCTTGGCAG
CAACCATCCTAACCTCCTTGAAGCCATGGTAATTGCCGAAAAGTTCCTGAAGCCTCTCAGGAGTTGTGTCGTGAGGAAGGTGTTGG
ACAAAGAGGATGTTGTTTGGGGGTGCGGGTGCCTCGGGAAAATTGCTTTTGACACCACCACCACCACCACCACCACCACCACCAGG
GTATGGTACTTGCGAAAGAGGAGGGGCA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880313 hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp. lyrata] | 340 | 1e-030 |
| NP_182280 spliceosomal protein U1A [Arabidopsis thaliana] | 336 | 4e-030 |
| ABK94716 unknown [Populus trichocarpa] | 318 | 4e-028 |
| XP_002320337 predicted protein [Populus trichocarpa] | 318 | 4e-028 |
| XP_002523100 small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis] | 316 | 7e-028 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P43332 U1 small nuclear ribonucleoprotein A | 181 | 2e-013 |
| P45429 U1 small nuclear ribonucleoprotein A | 175 | 1e-012 |
| Q9CQI7 U2 small nuclear ribonucleoprotein B'' | 174 | 2e-012 |
| Q2KIR1 U1 small nuclear ribonucleoprotein A | 173 | 2e-012 |
| P09012 U1 small nuclear ribonucleoprotein A | 173 | 2e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q39244 At2g47580/T30B22.12 | 336 | 2e-030 |
| A9PEB3 Putative uncharacterized protein | 318 | 3e-028 |
| B9I9Q4 Predicted protein | 318 | 3e-028 |
| B9SAT1 Small nuclear ribonucleoprotein U1a,U2b, putative | 316 | 5e-028 |
| B9GSB4 Predicted protein | 310 | 2e-027 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G47580.1 U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding / nucleic acid binding / nucleotide binding | 337 | 2e-032 |
| AT2G30260.1 U2B'' (U2 small nuclear ribonucleoprotein B); RNA binding / nucleic acid binding / nucleotide binding | 231 | 4e-020 |
| AT1G06960.1 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 215 | 3e-018 |
| AT1G06960.2 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 215 | 3e-018 |
| AT1G06960.3 small nuclear ribonucleoprotein U2B, putative / spliceosomal protein, putative | 215 | 3e-018 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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