Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN56529

FASTA Sequence
Unigene ID: UN56529Length: 713 SSR 
GGTGACGCACCAGAAGCAGTACATCAACTCTCTAAACACTTGGCTGAAGCTAAACCTCATCCCCATCGAGAGCAGTCTCAAGGAGA
AAGTCTCCTCTCCTCCGAGGCCTCAGCGTCCACCATCCAAGCCCTCCTCCACTCGTGGCACGACCGCCTGGAGAAACTCCCCGACG
AGGTGGCCAAGTCGGCTATCTCCTCCTTCGCGGCGGTCGTGAAAACGATCTTGCTTCACCAGGAGGAAGAGATGAAGCTGAAGGAG
AGATGCGAGGAGACGAGGAGGGAGTTCATTAGGAAGAAGCAAGGGTTTGAGGAGTGGTATCAGAAACACTTGCAGAAGAGAGGACC
GACGACGGCGGAGGAAGGCGGGGATGGAGATGATGATCATGTCACTGAGAGGAGGATCGTTGTGGAGACGCTGAAGAAAAGGCTTG
AAGACGAAGAGGAAGCTCATCAGAGGCATTGTGTCCAGGTGAGGGAGAAGTCTCTGAATAGTTTGAAGATAAGGTTGCCTGAGATC
TTCAGGGCGTTGTCTGATTATGCTCACGCTTGTGCTGATTCGTATGAGAATCTCAGAGTCATATCGCAGACTCAGAAAGGCAATGT
ATCTTCTTGAACCAGTTTTAGTCTCTCTCTCTCTCTCTCTGCTTTTGTATTAAGAACTCTTGTTGTTGAAAGTTTTGTAGAAGTTT
TTAAACTTAAATGACTTCGTGTTGT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_197941 uncharacterized protein [Arabidopsis thaliana]7464e-077
XP_002874269 hypothetical protein ARALYDRAFT_910621 [Arabidopsis lyrata subsp. lyrata]7303e-075
XP_002324252 predicted protein [Populus trichocarpa]6102e-061
XP_002516584 conserved hypothetical protein [Ricinus communis]6013e-060
XP_002281782 PREDICTED: hypothetical protein [Vitis vinifera]5833e-058

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8RWW9 Putative uncharacterized protein At5g255907463e-077
B9IKP2 Predicted protein6102e-061
B9RS65 Putative uncharacterized protein6012e-060
B9GX11 Predicted protein4839e-047
B9GFN5 Predicted protein4552e-043

Arabidopsis top hits (Blast detail)Scoree value
AT5G25590.1 INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF630 (InterPro:IPR006868), Protein of unknown function DUF632 (InterPro:IPR006867), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52320.4); Has 31848 Blast hits to 18905 proteins in 762 species: Archae - 79; Bacteria - 761; Metazoa - 15943; Fungi - 3494; Plants - 1748; Viruses - 431; Other Eukaryotes - 9392 (source: NCBI BLink).7462e-079
AT1G52320.1 unknown protein4397e-044
AT1G52320.2 unknown protein4397e-044
AT1G52320.3 unknown protein4397e-044
AT1G52320.4 unknown protein4397e-044

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
121  100%

Unigene Members