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Information for unigene UN57179
| FASTA Sequence |
| Unigene ID: UN57179 | Length: 800 |
SSR | | GGAAAAAGAAGAGTAAAAGTCAAAAAGTAAAGAGAAGCACTTTGTGAGAGAGAGAGAGAGAAAAAAGCCCGCGGAGGATGATGATG
TCCGTCGCGGCGGTAGAGCAGTTGCGCAGAAAGAAGAAGAAGAGGAGAAGGGTTGAGTCTCCATCATCATCATGTAGTAGGTTAAT
GTCTTTGCCATATGACATGGTTCAAAACTGCTTGGCCCGCGTGTCTAGATCCGACCTAGGGGCCTTATCTCTGGTCTCAAAGAGCA
TCCACTCACTGGTGGCTTCGCCGGAGATGTACGAGACCCGATCTCGAATGGGTTTGAGGGAGGAGTGCATCTACGTATGCTTGGGA
ACTAATTTTGGCACAATTACAAATCCTCTGGGATGGTTCATCCTCAGAAGAAAAGGGAATAATAGGCTGATCCCGATCCCGATCCC
TTCGTTCCCATCTCCTCGCAGAGCTACCTATGTCTCCATGGGATGTGGGATCTATGTAATTGGAGGAAGGATAGAAGCCGTGACGA
CATCGCGTGTCTCCTTCCTGGATTGTCGGACTCACACGTGGAGCGAGCTCCCCTCCATGAGGTTTGCTCGCTGTGAAGCCAACGCA
GGGGTTTTAGACGGAAAGATATACGTCATGGGAGGCTGCGATGATCCATTCTCCCGCGACAATCCAGAGGTTTTCGATCCAATGGC
GCAACTTGGAGCAGTGTGTGTATACCTGATCCGGTGATGAGCAAGAGCTTGCAGGTTGTTGGGCCGGATATAATATATTTCGTCAA
GTTTCGGAGTGAGAGGTTTGTGGATG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868960 hypothetical protein ARALYDRAFT_912541 [Arabidopsis lyrata subsp. lyrata] | 456 | 2e-043 |
| XP_002866962 hypothetical protein ARALYDRAFT_912622 [Arabidopsis lyrata subsp. lyrata] | 423 | 1e-039 |
| XP_002871008 hypothetical protein ARALYDRAFT_908166 [Arabidopsis lyrata subsp. lyrata] | 375 | 5e-034 |
| XP_002868914 hypothetical protein ARALYDRAFT_912422 [Arabidopsis lyrata subsp. lyrata] | 373 | 9e-034 |
| NP_001119398 F-box/kelch-repeat protein [Arabidopsis thaliana] | 367 | 5e-033 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| O80573 Putative F-box/kelch-repeat protein At2g44030 | 384 | 2e-036 |
| Q9FI70 F-box/kelch-repeat protein At5g49000 | 367 | 2e-034 |
| Q67XN8 F-box/kelch-repeat protein At4g39560 | 360 | 1e-033 |
| Q9LYY5 Putative F-box/kelch-repeat protein At5g03000 | 342 | 2e-031 |
| Q9SVA0 F-box/kelch-repeat protein At4g39580 | 335 | 1e-030 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G44030.1 kelch repeat-containing F-box family protein | 384 | 2e-037 |
| AT5G49000.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), Galactose oxidase/kelch, beta-propeller (InterPro:IPR011043), Kelch repeat type 1 (InterPro:IPR006652), Kelch related (InterPro:IPR013089), Kelch-type beta propeller (InterPro:IPR015915); BEST Arabidopsis thaliana protein match is: kelch repeat-containing F-box family protein (TAIR:AT4G39550.1); Has 5235 Blast hits to 3308 proteins in 165 species: Archae - 10; Bacteria - 167; Metazoa - 4114; Fungi - 13; Plants - 659; Viruses - 110; Other Eukaryotes - 162 (source: NCBI BLink). | 367 | 2e-035 |
| AT4G39560.1 kelch repeat-containing F-box family protein | 360 | 1e-034 |
| AT4G39560.2 kelch repeat-containing F-box family protein | 360 | 1e-034 |
| AT5G03000.1 kelch repeat-containing F-box family protein | 342 | 2e-032 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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