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Information for unigene UN57362

FASTA Sequence
Unigene ID: UN57362Length: 729 SSR 
GGAAGACTCTCTTGCTGGACTTTTATCAAGTTCCTCTGTTCTACACTGGCTGATGGTGCAACGACGTAAGGATGACAACTTGACAA
ACTTTACCGTGAAAGTGTCTTCCTTAAAAACATTATATTATAAAAGTGCTTGGCCCATGGATGAGCCCGTAGAAGGAAGGGGACGA
TGATGATGATGATCTCATTGGGTCGTTGGTACTAGATACCCCTGCACTAGATGATATAAGCTTAATTACCGTTTGCGAAGACTGCT
GCTTGATAGATAACATGTCTTGTCTTGAGGAGGCAAACATAAGCCATGTTATTTACCCCGATGACAAGTTTCTGAAATCTCTTTCT
TCTGTCAAACATCTGTACTTGTGTTTGACCAATCCGATGGTTGGTAGCAGTAACGACGTTAAATTCTCTCGGCTCATAGAGTTTTA
CTTCTTGACAAAAACAGTAGATTGGTTGGAACCACTTATGTTTTTCCTTCAAAATTCTGCTCAATTGAAATTTCTTACAATCCACA
CGGAACATGAGAGTCCATCACCTCCCTGGAACCAGCCGAGTTCTATTCCGGGATGCTTGTCATCTCATCTAGAGATCTTTGTGTGG
AACAACTATGAAGGAAGAGATGATGAGAAACAACTATTGTCATACATTCTTGCTAACTCAGAGTGTTTAAAGAGAGCGGAGATAAA
TCTCATAGCAACCTGCAATCTTGAAGAGAGACAAAAGGAGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
Q9LM63 RecName: Full=Putative F-box/FBD/LRR-repeat protein At1g220005502e-054
NP_173619 leucine Rich Repeat domain-containing F-box protein [Arabidopsis thaliana]5502e-054
XP_002893374 predicted protein [Arabidopsis lyrata subsp. lyrata]4794e-046
NP_174011 FBD, F-box and leucine rich repeat domain-containing protein [Arabidopsis thaliana]4534e-043
NP_199298 FBD domain-containing protein [Arabidopsis thaliana]3934e-036

Swiss-Prot top hits (Blast detail)Scoree value
Q9LM63 Putative F-box/FBD/LRR-repeat protein At1g220005501e-055
Q9CA04 Putative F-box/LRR-repeat protein At3g494802632e-022
Q9FHB5 Putative F-box/FBD/LRR-repeat protein At5g524602382e-019
Q9FJV1 F-box/FBD/LRR-repeat protein At5g565702311e-018
Q8LF09 F-box/FBD/LRR-repeat protein At4g001602174e-017

TrEMBL top hits (Blast detail)Scoree value
O48575 Gb|AAC79136.14051e-037
A0ME44 Putative uncharacterized protein (Fragment)2373e-018
B3H6N2 Uncharacterized protein At5g56452.22364e-018
Q9LQW9 T24P13.222364e-018
A0MFP8 Putative uncharacterized protein (Fragment)2275e-017

Arabidopsis top hits (Blast detail)Scoree value
AT1G22000.1 F-box family protein5501e-056
AT5G44850.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 4 anthesis, 4 leaf senescence stage, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G05080.1); Has 469 Blast hits to 454 proteins in 19 species: Archae - 0; Bacteria - 2; Metazoa - 80; Fungi - 0; Plants - 386; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).3932e-038
AT3G49480.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT1G05080.1); Has 443 Blast hits to 431 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 441; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).2758e-025
AT5G56570.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56560.1); Has 445 Blast hits to 429 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 440; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).2311e-019
AT5G56800.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT5G56560.1); Has 519 Blast hits to 504 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 515; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).2273e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  100%

Unigene Members