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Information for unigene UN57489
| FASTA Sequence |
| Unigene ID: UN57489 | Length: 821 |
SSR | | GGCAACAACATAAAGTGCTTGTAGATCAAATATATTGTCATACAGACAAGCAAGCGAATTGCTTTTTTTTTATATAACAACAAAGA
AAAATGCTAACTCAATAACATAACACAACATGATAATAATAATAATAATAATCCGATTCTTAAAATTCAACCCCGGAGATAATTAG
TCAATGCTTTCTTTGGACCAAATCCACACCGTTCTCTAATGTTTCTCCTAGAGAGAAACGGAGCTCTCTCTCCTCCTCCTCCACTG
ATGGGGCTTATCAATGGCATTGGTGAATAAGTTGGTGTCGATACAGAGAACGATGGAGTTCTGTAAGGAGTTGATGTGCCTGAGAA
TGACACAGAGAACAACGATGGAACCGAAATTCTCTTCCTTAGAGAACCTGCTGACCTACTTGATGCATCTTCTTTAGACAACAACC
TCAACTTGTCTGAACAAGAATCATCATGATCTTCTTTGCTGATATCATCCATGTACAACACTTCCTCTATGCGTACACCAATGCTA
TATGCTAAACTCTCTAATACCCTTGAGTAGCTCTCAAGTATAGACTTTCCTACATCCTTGTTGAACTGGATCTTGCTTGTGTCCAA
AGCTGTTTGTCTAAGTCCAGGGAAACGTTGCTTGAGGCTGATCAATAAGCTTTCAGCTCTTCCTGCAAACAACTCCCTCTTGTCAC
CATCGTTTTGATTCATCATCATCTCCCTCACTATCATCCCCCAAGAAGGTCTTGCACCTGTGGATCGATACAGAGAGATCAGATGC
CTGGAGTGAGCTCTCCTCCTCCAAATGTACATCGATGCTTCTACTCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002878043 hypothetical protein ARALYDRAFT_485999 [Arabidopsis lyrata subsp. lyrata] | 943 | 8e-100 |
| NP_191125 ROP (rho of plants) guanine nucleotide exchange factor 6 [Arabidopsis thaliana] | 939 | 2e-099 |
| XP_002524258 Rop guanine nucleotide exchange factor, putative [Ricinus communis] | 383 | 7e-035 |
| XP_002312130 predicted protein [Populus trichocarpa] | 382 | 9e-035 |
| XP_002277071 PREDICTED: hypothetical protein [Vitis vinifera] | 376 | 4e-034 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93ZY2 Rop guanine nucleotide exchange factor 1 | 300 | 1e-026 |
| Q9LQ89 Rop guanine nucleotide exchange factor 2 | 229 | 2e-018 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9M056 At3g55660 | 939 | 2e-099 |
| B9SE39 Rop guanine nucleotide exchange factor, putative | 383 | 5e-035 |
| B9HHI9 Predicted protein (Fragment) | 382 | 6e-035 |
| B9HT37 Predicted protein | 366 | 4e-033 |
| A5C739 Putative uncharacterized protein | 363 | 1e-032 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G55660.1 ROPGEF6; Rho guanyl-nucleotide exchange factor | 940 | 7e-102 |
| AT5G05940.1 ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5); Rho guanyl-nucleotide exchange factor | 305 | 3e-028 |
| AT5G02010.1 ROPGEF7; Rho guanyl-nucleotide exchange factor | 303 | 5e-028 |
| AT4G38430.1 ROPGEF1; Rho guanyl-nucleotide exchange factor/ protein binding | 300 | 1e-027 |
| AT3G24620.1 ROPGEF8; Rho guanyl-nucleotide exchange factor | 256 | 2e-022 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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