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Information for unigene UN57518
| FASTA Sequence |
| Unigene ID: UN57518 | Length: 756 |
SSR | | GCATTTAATTACGAAAATGTAGTTCCAACATAATGCGTTGTTTTCTCTTATACACACCCTCCTTGTTTACTTCACAGTCTGCTCCA
AACCATTAGTACTGCTTCAACTTCAACTTCAATTAATAGCATTTATAGAGACAGACAGCTAATATTTATAGAATTTACAGAAGAAG
AATATACAAGAGAAAAACACCCAAACTATAATGAAAGAAGATGTAAAAACACTCCTAATCTCTCTGGCTCTCTCTCTCTCTTGTGT
TTTGTTATAAACCCAATAAACCTATGAAAAACCGGGCTAAAGCAAAGAAGTTAACGAGTCAAGTCTTCACTTCCTACACCCACACT
TGATTTATCAACGACTATCCGTACATTGTATTGTTCGTAAACTCGTCCTCTGTTCTCTGCCCACCACTCTTCTGCTTGTTTCTCGC
TAAACCTCTTTCGGCTGAAACGAACACGTTTGAGATCCCTTGCCCCTCCCTCTAAAGCTGTAAGAGTGATGTACACACCAGGCTCA
TCTTGTTCAACCCACTCATTTTCATTACGGGGCTCACTTTCTTTCGCTCGAGTGCTGATTCTATTTATCGATTCAGCAGCATGATT
CGCTTGCTGTCGGTAACTTGCACCATCAAAAACAGGCGTGCTGGTCTCGTTAGAAAACATTGGGACGTCAGCATCAGTTTCTCGGC
CGTTTGGACGGTTTGATGTGTTAGAAGAAGGGGCAACGTAGTCTGGACTGGAACTAAACGAGTTAAGA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197443 regulator of chromosome condensation-like protein with FYVE zinc finger domain [Arabidopsis thaliana] | 670 | 3e-068 |
| NP_001190338 regulator of chromosome condensation-like protein with FYVE zinc finger domain [Arabidopsis thaliana] | 670 | 3e-068 |
| XP_002873947 hypothetical protein ARALYDRAFT_488831 [Arabidopsis lyrata subsp. lyrata] | 663 | 2e-067 |
| XP_002279913 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 376 | 4e-034 |
| XP_002279847 PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] | 373 | 8e-034 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8GZ92 Protein Brevis radix-like 4 | 224 | 7e-018 |
| Q6YUB8 Protein Brevis radix-like 1 | 218 | 4e-017 |
| Q5HZ09 Protein Brevis radix-like 3 | 209 | 4e-016 |
| O82281 Protein Brevis radix-like 1 | 202 | 3e-015 |
| Q8GYL9 Protein Brevis radix-like 2 | 200 | 4e-015 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q3E9B7 Putative uncharacterized protein At5g19420.1 | 670 | 2e-068 |
| B9GG94 Predicted protein | 372 | 7e-034 |
| B9SM24 Ran GTPase binding protein, putative | 370 | 1e-033 |
| B9HNF1 Predicted protein | 364 | 6e-033 |
| B9RGB2 Ran GTPase binding protein, putative | 326 | 2e-028 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G19420.1 Ran GTPase binding / chromatin binding / zinc ion binding | 690 | 6e-073 |
| AT5G12350.1 Ran GTPase binding / chromatin binding / zinc ion binding | 316 | 1e-029 |
| AT5G42140.1 zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein | 250 | 7e-022 |
| AT1G76950.1 PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding | 241 | 7e-021 |
| AT5G20540.1 ATBRXL4 (BREVIS RADIX-LIKE 4) | 224 | 7e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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