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Information for unigene UN57611

FASTA Sequence
Unigene ID: UN57611Length: 500 SSR 
AAATGAAAACACATTCATATTAGTGTCGAATAGTTTTGAGACCGAACACACAAGATTTCCACAGAACAGAGTTTTACTAAGAAGAA
AAAACAGAGCAAAAACATTTTAGCTTAAAAAAAAACAATAGAATACATAGGTTTGTTATCTTGCCCCTATTCCTCACTCTTGGACT
TTCTTCTTCTTCGATTTCTTCTTGCTCTGAGTCTGGCCATCATCAGTCTCCTCCTCTCCTCGAGACTTCCTCTTCTCTTTCTTCTT
CTTATTCTCTGACTTGTCCTCATCAACTGCCTCCTCTTCTTCACCCTTTGCCTTCTTCTTCTTCTTGCTTTTCTTTCCTGAGGCCT
CCACTGTCTCCTTCACTTCCTCATCTTTGTTTTGGAGATTCTCTATCACCTCCTTCATTACATCCGCGTTCTTACGTGGGGCAACA
CCCTTGGCATAAAACTCCAGCCTTTCCTCTACCTGTTCCCTAAGCTTCTCACCAAATGCAGTTGTTGCGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002894559 hypothetical protein ARALYDRAFT_474678 [Arabidopsis lyrata subsp. lyrata]3704e-034
NP_176007 homolog of nucleolar protein NOP56 [Arabidopsis thaliana]3491e-031
NP_187892 NOP56-like pre RNA processing ribonucleoprotein [Arabidopsis thaliana]3014e-026
XP_002882791 hypothetical protein ARALYDRAFT_478647 [Arabidopsis lyrata subsp. lyrata]3005e-026
AAT95868 putative preRNA processing ribonucleoprotein [Brassica juncea]2772e-023

Swiss-Prot top hits (Blast detail)Scoree value
Q9D6Z1 Nucleolar protein 562092e-016
Q54MT2 Nucleolar protein 561974e-015
Q3SZ63 Nucleolar protein 561922e-014
Q5RA29 Nucleolar protein 561894e-014
O00567 Nucleolar protein 561885e-014

TrEMBL top hits (Blast detail)Scoree value
Q9SGT7 At1g56110/T6H22_93491e-031
Q9LTV0 Nucleolar protein3015e-026
Q49SB6 Putative preRNA processing ribonucleoprotein (Fragment)2773e-023
Q9ZRW0 Nucleolar protein (Fragment)2764e-023
B7FLU4 Putative uncharacterized protein2721e-022

Arabidopsis top hits (Blast detail)Scoree value
AT1G56110.1 NOP56 (Arabidopsis homolog of nucleolar protein Nop56)3491e-033
AT3G12860.1 nucleolar protein Nop56, putative3014e-028
AT3G05060.1 SAR DNA-binding protein, putative1392e-009
AT5G57120.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: LisH dimerisation motif (InterPro:IPR006594), SRP40, C-terminal (InterPro:IPR007718); Has 90949 Blast hits to 45608 proteins in 1620 species: Archae - 300; Bacteria - 8281; Metazoa - 37603; Fungi - 8095; Plants - 3374; Viruses - 548; Other Eukaryotes - 32748 (source: NCBI BLink).1374e-009
AT3G57150.1 NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase1232e-007

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
61  100%

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