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Information for unigene UN57761
| FASTA Sequence |
| Unigene ID: UN57761 | Length: 664 |
SSR | | AGGAAAGCAATTAAGATGCGTTTGCTAGTAGCTGAAGTAGCTGCAGCAGCTTCACCATTGTCCTCTGCTTCTACAGAATGTAACTC
TCCTACTTGCAGATGGAAGCCTTACTCCAACTCTACTGACTTCCAAGCGAACGCATCCGTCCTCCTCATACTTCTCTTCTCTGCTC
TCATATGTGCTCTCTCTCTCTGCGCTGCCATCCGTTGCTTTCTCCGGCCAACAACTCCCGAGACTGACGCCAACGACCACAAGCCT
GGTCTTGAAGCTGATGGTTCGTCCATTATAGCAACTCCTAGTGTCTACTCCTCAGACCTCGAGCTAGCAGGAGCTGAAGCAGAGTG
TGCCATTTGCTTGTCTGAATTCGAAGAAGGTGAGAGCATCCAAGTGCTGGAGAAATGTCATCATGGGTTCCATGTTAAGTGCATCC
ACAAGTGGCTCTCTTCCCACTCATCCTGTCCTACTTGCCGGACTTCTATCTTCTTGCAAAGCACCTTAGACTCTGCACCATCAACC
GAAGCTACTTCAACAAACCAGATCAATGCTTAGCTTTCCTCACTTCAACTCCCACTTTCTCATATTTCTTTCATCCAAATCTTAGA
GTTATATCATGTTTTGCTTAGAGTTGTAACATGTTTTGCTTGAGATTACTACCGTGATGTTC
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| GenBank top hits (Blast detail) | Score | e value |
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| ABD64996 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) containing protein [Brassica oleracea] | 762 | 5e-079 |
| ABD64960 zinc finger, C3HC4 type (RING finger) containing protein [Brassica oleracea] | 608 | 4e-061 |
| NP_199572 RING-H2 finger protein ATL79 [Arabidopsis thaliana] | 602 | 2e-060 |
| XP_002863330 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 593 | 2e-059 |
| XP_002300529 predicted protein [Populus trichocarpa] | 394 | 2e-036 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FGJ6 RING-H2 finger protein ATL5M | 602 | 9e-062 |
| Q6NQG7 RING-H2 finger protein ATL1L | 306 | 2e-027 |
| Q9FLC6 RING-H2 finger protein ATL5B | 267 | 6e-023 |
| Q9LZV8 RING-H2 finger protein ATL5A | 223 | 8e-018 |
| O22755 RING-H2 finger protein ATL2A | 220 | 2e-017 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q2A9Q2 RNA recognition motif. (A.k.a. RRM, RBD, or RNP domain) containing protein | 762 | 3e-079 |
| Q2A9U3 Zinc finger, C3HC4 type (RING finger) containing protein | 608 | 2e-061 |
| Q1H5E6 At5g47610 | 602 | 1e-060 |
| B9GJJ3 Predicted protein (Fragment) | 394 | 2e-036 |
| B9I0N4 Predicted protein | 385 | 2e-035 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G47610.1 zinc finger (C3HC4-type RING finger) family protein | 602 | 8e-063 |
| AT4G17245.1 zinc finger (C3HC4-type RING finger) family protein | 414 | 5e-041 |
| AT1G49230.1 zinc finger (C3HC4-type RING finger) family protein | 306 | 2e-028 |
| AT5G05280.1 zinc finger (C3HC4-type RING finger) family protein | 267 | 6e-024 |
| AT5G01880.1 zinc finger (C3HC4-type RING finger) family protein | 223 | 7e-019 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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