 |
Information for unigene UN57986
| FASTA Sequence |
| Unigene ID: UN57986 | Length: 696 |
SSR | | GGACTTCCTTGTCTGTCTGCCTCTCTCTCTCTCTCTCTCTCCTAGTAAATGCTGTCGCTAACCTCTTGATCCGAGAAAAATGGCAA
GTCTATCTTCGGAGGAAGACGAAGAATGCTCTTCCGAGAGATGCGGAAGCTACAGCCCCAGCGCCGACGTTAGTTGCCAGTCGGAG
AGTTCCAGCAGCTTCTTCGGAGAAGCCTCTAGCCTCCGTAGGTTTTACTTCCCTGCCCCTGTCATGCTTCCTGTCATCGGCGGCAA
AGACGTTGTCTGGGATGACAAGTCAGTGAAACAGAACAGCGACTTATCCGAAATTGAGATGATGAAGGAGAGATTTGCTAAGTTAC
TTCTCGGAGAAGACATGTCTGGAGGAGGTAAAGGTGTTTGCACAGCTCTTGCAATCTCCAACGCCATTACCAATCTCTCTGCGACT
GTGTTTGGTGAGCTATGGAGGCTTGAGCCTCTTGCTTCTCAAAAAAAGGCAATGTGGCGTAGAGAGCTCGAGTGGTTACTCCGTGT
CTGCGATTCCATCGTTGAGCTCATTCCTTCCACTCAGCAGTTCCCTGGAGGAGGAGGTGGGACTTACGAGATCATGGAGACTCGCC
CTCGTTCTGATCTCTATGCCAACCTCCCTGCTCTTAAGAAGCTCGATGCAATGTTGATTGATATGCTCGACGGTTTCTCAGACACT
GAGTTCTG
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_195556 Rop guanine nucleotide exchange factor 1 [Arabidopsis thaliana] | 851 | 3e-089 |
| AAL07042 unknown protein [Arabidopsis thaliana] | 851 | 3e-089 |
| XP_002866797 hypothetical protein ARALYDRAFT_490605 [Arabidopsis lyrata subsp. lyrata] | 723 | 2e-074 |
| XP_002528427 Rop guanine nucleotide exchange factor, putative [Ricinus communis] | 702 | 5e-072 |
| XP_002306208 predicted protein [Populus trichocarpa] | 683 | 8e-070 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93ZY2 Rop guanine nucleotide exchange factor 1 | 851 | 1e-090 |
| Q9LQ89 Rop guanine nucleotide exchange factor 2 | 423 | 5e-041 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9SR08 Rop guanine nucleotide exchange factor, putative | 702 | 3e-072 |
| B9H1M7 Predicted protein | 683 | 6e-070 |
| B9HR10 Predicted protein | 669 | 2e-068 |
| B9GQ53 Predicted protein | 615 | 4e-062 |
| B9H5D7 Predicted protein (Fragment) | 602 | 1e-060 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G38430.1 ROPGEF1; Rho guanyl-nucleotide exchange factor/ protein binding | 851 | 1e-091 |
| AT5G02010.1 ROPGEF7; Rho guanyl-nucleotide exchange factor | 496 | 2e-050 |
| AT5G05940.1 ROPGEF5 (ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 5); Rho guanyl-nucleotide exchange factor | 486 | 2e-049 |
| AT4G00460.1 Rho guanyl-nucleotide exchange factor | 448 | 6e-045 |
| AT4G00460.2 Rho guanyl-nucleotide exchange factor | 448 | 6e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
| Unigene Members | |
 |
|
|
