RadishBase

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Information for unigene UN58047

FASTA Sequence

Unigene ID: UN58047	Length: 778	SSR
GCGCATTATTATTACACACTCATCTAGAGAGAGAAAAGAGACATCTTGAGATGGAAGGCAAAGAAGAGGATGTTAGAGTCGGAGCC AACAAGTTTCCGGAGAGACAACCGATCGGAACATCGGCTCAGAGCGACAAGGACTACAAGGAGCCACCTCCTGCGCCCTTGTTCGA GCCCGGCGAGCTTGCTTCGTGGTCCTTCTGGAGAGCTGGTATCGCTGAGTTCATCGCCACGTTCTTGTTCCTTTACATCACTGTTT TAACCGTCATGGGAGTCAAGAGGTCACCGAACATGTGTGCTTCTGCCGGAGCTGAGATTATTGGAACTTTTGTCCTTGTTTACACC GTCTTCTCCGCCACTGACGCCAAGAGGAACGCTCGTGACTCTCATGTTCCCATTCTTGCACCTCTCCCTATCGGATTCGCTGTGTT CTTGGTCCACTTAGCAACCATCCCCATCACTGGTACTGGAATCAATCCAGCGAGGAGTCTTGGAGCTGCAATCATCTTCAACAAGG ACAACGCTTGGGACGACCATTGGGTGTTTTGGGTTGGACCATTCATCGGTGCTGCACTTGCCGCTCTTTACCACGTGATTGTCATC AGAGCCATCCCATTCAAGTCCAGAAGCTGATTGAGTTACTCTTAGTTTGCTTTTCTTTTGTGAATGTACTACTACTACTACTACTA CTACTTGTGTGAACATCGTGCATGTGTTTGTTCCTCTTCTTTGCCTAATGCAGACTCTATTTGTAATACAGAGTCAGAGACATCCC CGGA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAA92258 plasma membrane aquaporin 1b [Raphanus sativus]	561	1e-055
CAA64896 transmembrane channel protein [Brassica oleracea]	561	1e-055
NP_182120 aquaporin PIP1-2 [Arabidopsis thaliana]	561	1e-055
AAB61378 aquaporin [Brassica rapa subsp. campestris]	561	1e-055
CAB37860 PIP1b protein [Arabidopsis thaliana]	561	1e-055

Swiss-Prot top hits (Blast detail)	Score	e value
Q06611 Aquaporin PIP1-2	561	6e-057
P61837 Aquaporin PIP1-1	549	2e-055
P61838 Aquaporin PIP1.1	549	2e-055
Q08733 Aquaporin PIP1-3	539	2e-054
Q39196 Probable aquaporin PIP1-4	535	7e-054

TrEMBL top hits (Blast detail)	Score	e value
A9X4U3 Aquaporin PIP1	561	1e-055
B1PRK1 Putative aquaporin	561	1e-055
B1PRK2 Putative aquaporin	561	1e-055
O04671 Aquaporin	561	1e-055
Q39384 Transmembrane channel protein	561	1e-055

Arabidopsis top hits (Blast detail)	Score	e value
AT2G45960.1 PIP1B (NAMED PLASMA MEMBRANE INTRINSIC PROTEIN 1B); water channel	562	5e-058
AT3G61430.1 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel	550	1e-056
AT3G61430.2 PIP1A (PLASMA MEMBRANE INTRINSIC PROTEIN 1A); water channel	550	1e-056
AT1G01620.1 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel	540	2e-055
AT1G01620.2 PIP1C (PLASMA MEMBRANE INTRINSIC PROTEIN 1C); water channel	540	2e-055

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	1			100%

Unigene Members