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Information for unigene UN58204
| FASTA Sequence |
| Unigene ID: UN58204 | Length: 670 |
SSR | | GGGCTTTCTTCGCCTATTCATCTTCCTTTCAAGGGTTTTGCGCTCATCCGTCTCCCTTCTCTCTCTCTCTCTTCTCTCTCACTCGC
TTTCTGTGATGACGACGAGATCTAACTCCGATGACTGTCTTGTGCAAGACCCACTAACCTCCTCAGAAAAGCTTCCATCTCTCGCG
AAGATTCGGCTGAGGAAGACTCGCTAAAGGTCGTTTCTTTATCTCTTCCACTAGAGAACGACTCTGTTGTAGAGATAAGCTCAAAG
AATCAAGTAAAGTCTTCGCCTTTTGATTCTGTTACTGGGAAAGAAGATAGTGAGAGTATCCATCCGGATTCTGTTGAACTTTCTTT
ATCTGAAGCCCAGGCTATGGATGTGGATTGTCCTGGAGTCCTCTCTGTATCTGAAGCTGCCTCCGCGTTTTGTGAACAGAACAAGG
TTGGTGAGGAGCTGCAAGAGACCAAGGAAACGTCTGCTGCGCAAGATGATGTGCACAAGATGGAGGAGACTGATGTGTCCGTTGTT
TGTAAGGGACAAGAAGATTCCGATGTTGAGAGACTTTTGGAGGCTGAGAAGAGGAGACTGTTGGCTGAGATCGAAACCGGAGCAAT
CTTCAGAAGGAGGAAGATGCGGAGACGCTCGCTGTGGCTTCTGATTTTCATCAGAAGTGGAGAGAGTG
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002879989 hypothetical protein ARALYDRAFT_483344 [Arabidopsis lyrata subsp. lyrata] | 247 | 3e-019 |
| XP_002891889 hypothetical protein ARALYDRAFT_474711 [Arabidopsis lyrata subsp. lyrata] | 161 | 2e-009 |
| EFT43147 LPXTG-motif protein cell wall anchor domain protein [Enterococcus faecalis TX0017] | 136 | 2e-006 |
| XP_001744185 hypothetical protein [Monosiga brevicollis MX1] | 134 | 3e-006 |
| ZP_05564904 predicted protein [Enterococcus faecalis Merz96] | 134 | 3e-006 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A9UUE5 Predicted protein | 134 | 2e-006 |
| C7WYI0 Predicted protein | 134 | 2e-006 |
| B9QPF4 DNA mismatch repair protein, putative | 131 | 5e-006 |
| D4V2T5 LPXTG-motif cell wall anchor domain protein | 131 | 5e-006 |
| C2DG99 Cell wall surface anchor family protein | 129 | 9e-006 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G42510.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1); Has 294 Blast hits to 263 proteins in 60 species: Archae - 2; Bacteria - 35; Metazoa - 52; Fungi - 12; Plants - 28; Viruses - 0; Other Eukaryotes - 165 (source: NCBI BLink). | 279 | 2e-025 |
| AT2G42510.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1). | 279 | 2e-025 |
| AT2G42510.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Survival motor neuron interacting protein 1 (InterPro:IPR007022); BEST Arabidopsis thaliana protein match is: spliceosome protein-related (TAIR:AT1G54380.1). | 279 | 2e-025 |
| AT1G54380.1 spliceosome protein-related | 111 | 7e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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