Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN58738

FASTA Sequence
Unigene ID: UN58738Length: 662 SSR 
GGACAATTATATACATAAAGAGAGAGAGAGGTAGATAACACTTGAGAGAGAGATGGTGTATGCAGGTTACTGCTTGAAGGAGAAGA
AGACATGTGTGAGATGGGTGGAGAGATACTTCGATGACTGTCTTTGTAACCTGAACGATGAAGTCTCGTTCTCACTTGGAATCGTT
AGCCTTATCTGCTGGGGCGTGGCAGAGATTCCCCAGATCATTACCAACTTCCGTACAAAATCTAGTCATGGTGTCTCTCTATCTTT
CCTCCTCGCTTGGGTCGCTGGTGATATCTTCAATCTCATCGGGTGTCTTCTTGAACCAGCTACCTTGCCGACTCAGTTCTACACAG
CCTTGTGAGCACCGTGGTATTAGTGATCCAGACAATTTACTACGACTATATCTACAGACTTTGTACACATGGACGCACCAAGATCT
GTCAAAAGGAGGAAGAGGATGAAGAGAAGAGGCCATTAAACCCACCGAAGACGATGGGATCTGCAATTTCCATCCCAGGAGAATCT
TACAAAGCTTCTCCTCTGAGAGAGTTCTATTACACGTCAGCGAGATCACTGGCCGGAAGCGGAACACCGCCTTTAAGAACGTCGTA
TTTTCGGGTGGCTAAGAGTGGACCTTCAGCCATGACAATAGATAGTGGTTCCTCCTCGGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002866989 hypothetical protein ARALYDRAFT_490949 [Arabidopsis lyrata subsp. lyrata]5062e-049
CAB16817 putative protein [Arabidopsis thaliana]4902e-047
NP_568009 PQ-loop repeat family protein / transmembrane family protein [Arabidopsis thaliana]4902e-047
BAH56966 AT4G36850 [Arabidopsis thaliana]4902e-047
CBI17580 unnamed protein product [Vitis vinifera]4382e-041

Swiss-Prot top hits (Blast detail)Scoree value
Q8C4N4 PQ-loop repeat-containing protein 21502e-009
Q6ZP29 PQ-loop repeat-containing protein 21484e-009
P38279 Protein RTC21458e-009
Q5ZJX0 PQ-loop repeat-containing protein 21369e-008

TrEMBL top hits (Blast detail)Scoree value
C0Z2N7 AT4G36850 protein4901e-047
O23198 Putative uncharacterized protein AT4g368504901e-047
Q94AH7 Putative uncharacterized protein At4g368504901e-047
B9T4V4 Putative uncharacterized protein4372e-041
B7FIG7 Putative uncharacterized protein4245e-040

Arabidopsis top hits (Blast detail)Scoree value
AT4G36850.1 INVOLVED IN: biological_process unknown; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 599 Blast hits to 441 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 311; Plants - 38; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).4908e-050
AT2G41050.1 PQ-loop repeat family protein / transmembrane family protein2632e-023
AT4G20100.1 PQ-loop repeat family protein / transmembrane family protein2551e-022

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
81  100%

Unigene Members