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Information for unigene UN58835
| FASTA Sequence |
| Unigene ID: UN58835 | Length: 686 |
SSR | | AGGGGAAACATCTCAGGCTTTTATCTTCTTCTTCTTCTTTGATTATCAGATAAGAAGAAAAAACCTATTAAATGCCTTGAATAGCT
ACTCTCTTTATTTACATGGCACCACCACTGGTTTCTCTCAGGGTAGCACTCCTTTATCTTAGAGTTTTGACTGTGGCTTTCCTCGT
TATAACTGTCATCATCCTCAGCACCAACAGCGTCACCATCGTATCTCAAGGAAACTCAATGAAATTTCATTTCAAAGATGTTTATG
CCTATAGATACATGTTTTCAGCCGCCATCATCGGATTGATTTACGCTGTCATACAACTATTCTTCACAATCTCTGAACTTGCCACC
AGAACGAAAAACCCTTTCAATTATCAACTGGATTTTTATGGTGACAAGATAATATCATATCTAGTGGCAACTGGTTCGGCTGCGGG
ATTTGGAGTGACCAAAGATTTAAAAGATACATTTCTAGCATTAGTCGTATTAGATTCGACTGATCCCGTAGATAAGCTCTTCAGTA
GAGGATACGCATCGGCTAGTATGCTTCTCTTTGCTTTCTTCTGCCTTGCTGTTTTATCTGTTTTTTCATCACACATTGCCAAACAC
CAGTTTAGTTAAGTTTCATCATTATTCATTCATACCTTTTTTCTATTTGATCATTTAGCTTTGTTGCAACGTAATGTGTTAGTG
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_001078023 UPF0497 membrane protein [Arabidopsis thaliana] | 690 | 1e-070 |
| XP_002881661 hypothetical protein ARALYDRAFT_903204 [Arabidopsis lyrata subsp. lyrata] | 677 | 4e-069 |
| XP_002881662 hypothetical protein ARALYDRAFT_903205 [Arabidopsis lyrata subsp. lyrata] | 591 | 4e-059 |
| NP_181485 UPF0497 membrane protein [Arabidopsis thaliana] | 581 | 5e-058 |
| XP_002530845 conserved hypothetical protein [Ricinus communis] | 374 | 5e-034 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q56X75 UPF0497 membrane protein At2g39518 | 690 | 6e-072 |
| Q8GWD5 UPF0497 membrane protein At2g39530 | 581 | 2e-059 |
| B9SXY8 UPF0497 membrane protein 17 | 374 | 3e-035 |
| B9NBE5 UPF0497 membrane protein 11 | 355 | 4e-033 |
| A1XGB4 UPF0497 membrane protein PIMP1 | 292 | 8e-026 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A5C0X4 Putative uncharacterized protein | 299 | 2e-025 |
| B9SXY9 Putative uncharacterized protein | 299 | 2e-025 |
| C6T4S9 Putative uncharacterized protein | 251 | 7e-020 |
| A5ADE5 Putative uncharacterized protein | 231 | 1e-017 |
| A2ZF82 Putative uncharacterized protein | 205 | 1e-014 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT2G39518.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: integral membrane protein, putative (TAIR:AT2G39530.1); Has 80 Blast hits to 80 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 80; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 690 | 5e-073 |
| AT2G39530.1 integral membrane protein, putative | 581 | 2e-060 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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