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Information for unigene UN59388
| FASTA Sequence |
| Unigene ID: UN59388 | Length: 708 |
SSR | | TTTTTTTTTCCAGTCTCTCTCGCTGAGGCTTAGGCAGAGGAGCATGAACGACATGCTTAGTATCCTTGCGCATACGAGCAATCTGC
CTGCTTGTTTTGTGATATCCAGGTTTTCCTTCAAGAGGCGCCAGAAAGTCTTCCTCGGTGAGGACGTTCTTACCCTCCAGAACATC
TCGGGTGGGGTTGAATTCTCCCTCTGGGTATGCTTCAGTAAAGAGCACAGGTTTGCTCTTACTCTCACCTTGAAAGGCTGCACTTG
GCATTCCAGTGAGAGACTGCAACATCCGTGTGTGTCTATCATCATCATCATCATCATCATTCTCGCTGTTACCACCATCAACATCA
TCATCTTCTGACTCTACGTTTTCATCCTCGAAATCGTCGGGGAGCTCGTAGTCGTAGTTATCATGGCGGTCGTAACGGTTGTTCTT
CCTGGATTCTTCTTCAGGGACACCTTCTTCGTACTCGTACAGATCGCCGCCGTGTTCATCATCGGAATCGATCTCGTCTTCTTCTT
CTTCTTCGTCCGAGTTTAGAGGACGTTTCTGGTCCGCAATGACCTTGAGGATTGAGTTGGGCAAGTGAGGCCCTTTCTTCTTCTTC
TTTGACTTAGCTACGCTTTTGGCACTCGATGATGATTTCCTCTTCAATCCTCCCATGGTTGTCTGTTTTTCTGTCGACGACTCGAG
TGAGAGAGAGAGAGAGAGCC
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| GenBank top hits (Blast detail) | Score | e value |
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| AAC19284 T14P8.20 [Arabidopsis thaliana] | 815 | 4e-085 |
| NP_567232 U3 ribonucleoprotein-like protein [Arabidopsis thaliana] | 815 | 4e-085 |
| BAF02036 hypothetical protein [Arabidopsis thaliana] | 812 | 9e-085 |
| XP_002874917 hypothetical protein ARALYDRAFT_490329 [Arabidopsis lyrata subsp. lyrata] | 770 | 7e-080 |
| NP_196477 U3 ribonucleoprotein (Utp) family protein [Arabidopsis thaliana] | 692 | 7e-071 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P13816 Glutamic acid-rich protein | 145 | 9e-009 |
| O77384 LRR domain-containing protein PFC0760c | 140 | 4e-008 |
| Q08438 Protein VHS3 | 124 | 3e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O81293 AT4g02400 protein | 820 | 7e-086 |
| Q0WLH1 Putative uncharacterized protein At4g02400 | 817 | 2e-085 |
| Q9FNM8 Genomic DNA, chromosome 5, P1 clone:MAH20 | 699 | 8e-072 |
| A5BKC3 Putative uncharacterized protein | 299 | 2e-025 |
| B9SAS6 U3 small nucleolar RNA-associated protein, putative | 258 | 1e-020 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G02400.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: U3 ribonucleoprotein (Utp) family protein (TAIR:AT5G08600.1); Has 7412 Blast hits to 4272 proteins in 301 species: Archae - 10; Bacteria - 517; Metazoa - 2926; Fungi - 722; Plants - 242; Viruses - 149; Other Eukaryotes - 2846 (source: NCBI BLink). | 820 | 5e-088 |
| AT5G08600.1 U3 ribonucleoprotein (Utp) family protein | 699 | 5e-074 |
| AT5G36980.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: rRNA processing; LOCATED IN: small-subunit processome; CONTAINS InterPro DOMAIN/s: Small-subunit processome, Utp14 (InterPro:IPR006709); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02400.1); Has 12 Blast hits to 12 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 12; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 142 | 2e-009 |
| AT5G63740.1 zinc finger protein-related | 131 | 4e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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