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Information for unigene UN59697
| FASTA Sequence |
| Unigene ID: UN59697 | Length: 705 |
SSR | | GATCATCGTCATTTTGCTCCCTCCCGTCTTTTGTTTCGCCGTCACCGTCTTCCTCTTCCATAGCCGCCAGATTCCTGCAAATGGCA
GCTTTCAGGCGAGCCTTATCTATAAGGTCCACCCTTACCGGTCGACAACGGTATCAACTAGCTATCCACATCATCCCTCGTGACAA
TGATCATGAAGAGAGTTCTTCATTCACTTCTCAAAGAAGTTACCATAGCTTCCTTCACCAACAAAGATCCTCCTCTATCATCAACT
CAGACCTCTCCCATTTTCCTGGAGGAGGAGGAGGAGGAGGCTTACATCTGCCTCTGGCTCCTACCTCTGCTTTTGCTTTCTATCGC
TATATGTCAAGTGCGCATGGTGTTGGTTCCGATAAGATTGGTGTCATCAACGACATCGCTGAAGTCATAACCGACTCAGCTACGTT
GCACGATGTGCCAGCTCAGGCTGCTGCTGCAGTCGGTGAAGTTGCACTTGCGGCTAATGACTCTTTTTTGCCTATTGCGGCTCTTC
AGCATTGCATTGATATGGTTCATTGTTACACTGGTTTGGAGTGGTGGGCGTCCATTGTTTTAGCAACAGTTTTGATCCGGTCTTCA
ACAGTTCCTCTCTTGATTAAACAAATGAAAGACACTATGAAGTTATCCCTGATGAAGCCACGATTGGAAGCCATTCGCGAGGAAAT
GCAAACAAGGGAATGGA
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_201011 mitochondrial inner membrane protein OXA1 [Arabidopsis thaliana] | 674 | 9e-069 |
| XP_002866467 hypothetical protein ARALYDRAFT_496379 [Arabidopsis lyrata subsp. lyrata] | 666 | 8e-068 |
| XP_002297976 inner membrane protein [Populus trichocarpa] | 364 | 8e-033 |
| XP_002880242 hypothetical protein ARALYDRAFT_483801 [Arabidopsis lyrata subsp. lyrata] | 329 | 9e-029 |
| XP_002509958 cytochrome oxidase biogenesis protein, putative [Ricinus communis] | 316 | 3e-027 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q42191 Mitochondrial inner membrane protein OXA1 | 690 | 6e-072 |
| Q9SKD3 Mitochondrial inner membrane protein OXA1-like | 295 | 4e-026 |
| O43092 Mitochondrial inner membrane protein oxa1-2 | 137 | 8e-008 |
| O13375 Mitochondrial inner membrane protein OXA1 | 134 | 2e-007 |
| Q8L718 ALBINO3-like protein 2, chloroplastic | 122 | 4e-006 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GL61 Inner membrane protein | 364 | 6e-033 |
| B9RCS4 Cytochrome oxidase biogenesis protein, putative | 316 | 2e-027 |
| B9SWW1 Cytochrome oxidase biogenesis protein, putative | 308 | 2e-026 |
| A3C6J9 Putative uncharacterized protein | 281 | 2e-023 |
| Q8LNI1 Inner membrane protein OXA1-like, mitochondrial, putative, expressed | 281 | 2e-023 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT5G62050.1 OXA1; P-P-bond-hydrolysis-driven protein transmembrane transporter | 690 | 6e-073 |
| AT2G46470.1 OXA1L (INNER MEMBRANE PROTEIN OXA1-LIKE) | 295 | 4e-027 |
| AT3G49150.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein insertion into membrane; LOCATED IN: integral to membrane; CONTAINS InterPro DOMAIN/s: Cyclin-like F-box (InterPro:IPR001810), FBD-like (InterPro:IPR006566), 60 kDa inner membrane insertion protein (InterPro:IPR001708), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box family protein (TAIR:AT3G59240.1); Has 1228 Blast hits to 1197 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 2; Plants - 1199; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 132 | 3e-008 |
| AT1G65080.1 OXA1 family protein | 122 | 4e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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| Unigene Members | |
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