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Information for unigene UN59733

FASTA Sequence
Unigene ID: UN59733Length: 729 SSR 
GGATGAAGCGAGTATCAGCCATTAATGCTACTTCTCTTCTCAAACGAGATTTCTCTAACCACCTCTCCTCCTCCTCCTCCTCCTCC
TCTTCGTTACAGCTAATCCCCCGATGTGATGATCCACCTAAACCAATCCTCCTCAACCCGCTTTACAACCTACTTCCCAACACTCA
AAACCCTAATCGAATCGTCGACGTCATCTGCTCCTCTCTCAATCAACAACGAGATTTCCTCCCATCCAACCTCCACAACTCGGTCA
AATCGCTGATTCCTCATCTCGGCCACCGCGAAATCTCTAGGGCTCTGCTTAGGTTCCAGTCAGACGCCACTCGAGCTCTCTCCTTC
TTCAATTGGGTTAAATCCGATTCGGGTCTTACCCCGAACGTCGGTAACTACTGTCTGTTGCTTCACGTTCTCGCTTGGTCAAAGAA
GTTCCCCTTAGCTATGCAGTTCCTCTGTGAACTGATTGAGTTACTCGCTAAAGAAGAAGATGTGTTTAGTGTATTGGTTTCTGCTA
CTGAAGAGTGTAATTGGGATCCTGTCGTTTTCGATATGCTCGTCAAGGCCTACCTGAAACTAGGTTTGGTGGAAGAAGGCTACTCT
GTTTTTCGAAAGGTGATTGCTTTCGGTTTTCGTGTTAGCGTTGTCACTTGTAACCATCTCTTGAATGGTTTGCTGAAGCTGGATCT
AACGGATGACTGTTGGCGAGTGTATCAAGTCGTGTGTAGAG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002870709 binding protein [Arabidopsis lyrata subsp. lyrata]8478e-089
NP_198856 pentatricopeptide repeat-containing protein [Arabidopsis thaliana]8154e-085
XP_002277567 PREDICTED: hypothetical protein [Vitis vinifera]6273e-063
CBI15512 unnamed protein product [Vitis vinifera]6273e-063
CAN65388 hypothetical protein VITISV_038361 [Vitis vinifera]6202e-062

Swiss-Prot top hits (Blast detail)Scoree value
Q9FND8 Pentatricopeptide repeat-containing protein At5g404008152e-086
Q9LN69 Putative pentatricopeptide repeat-containing protein At1g192901781e-012
Q9SZ10 Pentatricopeptide repeat-containing protein At4g26680, mitochondrial1753e-012
O04504 Pentatricopeptide repeat-containing protein At1g098201395e-008

TrEMBL top hits (Blast detail)Scoree value
A5B987 Putative uncharacterized protein6201e-062
B9S636 Pentatricopeptide repeat-containing protein, putative5904e-059
B9IJM1 Predicted protein5563e-055
D2DW66 Putative uncharacterized protein2052e-014
B9RXK9 Pentatricopeptide repeat-containing protein, putative1981e-013

Arabidopsis top hits (Blast detail)Scoree value
AT5G40400.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 18933 Blast hits to 5737 proteins in 174 species: Archae - 4; Bacteria - 8; Metazoa - 352; Fungi - 335; Plants - 17540; Viruses - 0; Other Eukaryotes - 694 (source: NCBI BLink).8152e-087
AT1G19290.1 LOCATED IN: mitochondrion; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT5G55840.1); Has 31003 Blast hits to 6161 proteins in 194 species: Archae - 6; Bacteria - 22; Metazoa - 935; Fungi - 736; Plants - 27904; Viruses - 0; Other Eukaryotes - 1400 (source: NCBI BLink).1781e-013
AT4G26680.1 pentatricopeptide (PPR) repeat-containing protein1753e-013
AT4G13885.1 3'-5' exonuclease-related1663e-012
AT1G09820.1 pentatricopeptide (PPR) repeat-containing protein1395e-009

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
91  100%

Unigene Members